Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| ATMG00370.1 | Thale cress | plasma membrane | 99.5 | 99.5 |
| HORVU5Hr1G032220.1 | Barley | endoplasmic reticulum | 46.73 | 92.08 |
| HORVU5Hr1G032230.1 | Barley | endoplasmic reticulum, extracellular, golgi | 20.1 | 88.89 |
| KRH75850 | Soybean | extracellular | 34.17 | 80.95 |
| CDY45490 | Canola | plasma membrane | 86.93 | 67.32 |
| ATCG01000.1 | Thale cress | endoplasmic reticulum | 87.44 | 50.73 |
| CDX71646 | Canola | endoplasmic reticulum | 86.93 | 50.58 |
| CDY19665 | Canola | endoplasmic reticulum | 86.93 | 50.58 |
| CDY54623 | Canola | endoplasmic reticulum | 86.93 | 50.58 |
| CDY63593 | Canola | endoplasmic reticulum | 86.93 | 50.58 |
| AT2G07565.1 | Thale cress | extracellular, plasma membrane, vacuole | 53.27 | 41.73 |
| CDX95223 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 86.93 | 15.2 |
| CDY19657 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 86.93 | 15.2 |
| ATCG01130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 87.44 | 9.74 |
Protein Annotations
| ArrayExpress:AT2G07739 | EnsemblPlants:AT2G07739.1 | EnsemblPlantsGene:AT2G07739 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TIC214 | PANTHER:PTHR33163 | PANTHER:PTHR33163:SF13 | PFAM:PF05758 | PO:PO:0000293 | RefSeq:AT2G07739 |
| RefSeq:AT2G07739-TAIR-G | SEG:seg | TAIR:AT2G07739 | TAIR:AT2G07739.1 | TMHMM:TMhelix | UniParc:UPI00000A9A9C |
| MapMan:35.1 | : | : | : | : | : |
Description
Ycf1 protein [Source:TAIR;Acc:AT2G07739]
Coordinates
chr2:-:3495511..3496398
Molecular Weight (calculated)
23238.3 Da
IEP (calculated)
9.736
GRAVY (calculated)
0.677
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFQSFILGN LVYLCMKIIN SVVVVGLYYG FLTTFSIGPF YLFLLRARVM DEGEEGTEKK VSATTGFIAG QLMMFISIYY APLHLALGRP HTITVLALPY
101: LLFHFFFWNN HKHFFDYGST TRNEMRNLRI QCVFPNNLIF KLFNHLILPS SMLARLVNIY MFRCNNKMLF VTSSFVVCVR MLLVEWAFPL FQLFLVMKV
101: LLFHFFFWNN HKHFFDYGST TRNEMRNLRI QCVFPNNLIF KLFNHLILPS SMLARLVNIY MFRCNNKMLF VTSSFVVCVR MLLVEWAFPL FQLFLVMKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.