Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030284.1-P | Field mustard | nucleus | 99.41 | 100.0 |
| CDY72366 | Canola | nucleus | 97.63 | 96.49 |
| CDY70933 | Canola | nucleus | 89.35 | 89.88 |
| CDY59763 | Canola | nucleus | 88.17 | 89.22 |
| AT2G21660.1 | Thale cress | nucleus | 88.76 | 85.23 |
| CDY41969 | Canola | cytosol | 63.31 | 83.59 |
| CDY42616 | Canola | cytosol | 74.56 | 80.25 |
| Solyc10g051390.1.1 | Tomato | nucleus | 55.03 | 78.81 |
| CDX90323 | Canola | plastid | 76.92 | 78.79 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 60.95 | 77.44 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 72.78 | 75.93 |
| KRH29451 | Soybean | nucleus | 75.15 | 74.27 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 68.05 | 74.19 |
| CDY12133 | Canola | cytosol | 69.23 | 74.05 |
| PGSC0003DMT400001879 | Potato | cytosol | 76.92 | 73.86 |
| Solyc01g109660.2.1 | Tomato | extracellular | 76.33 | 73.71 |
| KRH29453 | Soybean | nucleus | 60.95 | 73.57 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 67.46 | 72.15 |
| KRH51528 | Soybean | nucleus | 77.51 | 71.98 |
| KRH29452 | Soybean | nucleus | 66.27 | 71.79 |
| Os12t0632000-01 | Rice | nucleus | 68.64 | 71.6 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 71.6 | 71.18 |
| Solyc10g051380.1.1 | Tomato | nucleus | 54.44 | 70.77 |
| CDY46213 | Canola | nucleus | 50.89 | 70.49 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 66.27 | 70.44 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 67.46 | 70.37 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 67.46 | 70.37 |
| CDX71276 | Canola | nucleus | 71.6 | 70.35 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 66.86 | 69.75 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 63.91 | 69.68 |
| KRH60842 | Soybean | mitochondrion | 75.74 | 69.19 |
| Zm00001d041246_P001 | Maize | nucleus | 59.17 | 68.97 |
| KRH29454 | Soybean | nucleus | 69.23 | 68.82 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 66.27 | 68.71 |
| TraesCS4A01G293000.1 | Wheat | plastid | 65.68 | 68.52 |
| PGSC0003DMT400084266 | Potato | extracellular | 65.09 | 68.32 |
| PGSC0003DMT400084290 | Potato | nucleus | 66.86 | 68.07 |
| PGSC0003DMT400084258 | Potato | nucleus | 66.86 | 68.07 |
| PGSC0003DMT400083014 | Potato | nucleus | 66.86 | 68.07 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 66.86 | 67.66 |
| Zm00001d031168_P001 | Maize | plastid | 61.54 | 67.1 |
| KXG37870 | Sorghum | nucleus | 67.46 | 67.06 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 65.68 | 66.87 |
| EES16438 | Sorghum | nucleus | 65.09 | 66.67 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 65.68 | 65.29 |
| TraesCS5D01G020900.1 | Wheat | plastid | 66.27 | 64.37 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 54.44 | 53.18 |
| Os03t0670700-01 | Rice | nucleus | 61.54 | 53.06 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 28.99 | 49.49 |
| CDY06468 | Canola | mitochondrion | 42.01 | 47.97 |
| CDY53035 | Canola | mitochondrion | 42.6 | 47.68 |
| CDY47314 | Canola | mitochondrion | 42.01 | 47.33 |
| CDY08312 | Canola | mitochondrion | 42.6 | 47.06 |
| CDY47311 | Canola | mitochondrion | 39.05 | 45.83 |
| CDY26743 | Canola | mitochondrion | 33.73 | 38.51 |
| CDY19230 | Canola | mitochondrion | 30.18 | 36.69 |
| CDX82164 | Canola | mitochondrion | 30.77 | 35.86 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 18.93 | 33.33 |
| CDY51614 | Canola | mitochondrion | 28.4 | 33.1 |
| CDY52166 | Canola | nucleus | 46.15 | 32.1 |
| CDX83617 | Canola | nucleus | 43.79 | 31.9 |
| CDY48990 | Canola | nucleus | 45.56 | 31.69 |
| CDY13632 | Canola | nucleus | 44.38 | 31.38 |
| CDX91368 | Canola | plastid | 26.63 | 31.03 |
| CDX74955 | Canola | plastid | 26.63 | 31.03 |
| CDX73070 | Canola | mitochondrion | 49.11 | 30.74 |
| CDX96526 | Canola | mitochondrion | 50.3 | 30.58 |
| CDY49123 | Canola | mitochondrion | 47.93 | 30.45 |
| CDY16825 | Canola | plastid | 47.34 | 30.42 |
| CDY31588 | Canola | nucleus | 13.61 | 29.49 |
| CDY42426 | Canola | mitochondrion | 41.42 | 28.93 |
| CDY09244 | Canola | mitochondrion | 17.75 | 28.85 |
| CDY28003 | Canola | plastid | 22.49 | 26.39 |
| CDY14089 | Canola | mitochondrion | 21.3 | 24.66 |
| CDY04982 | Canola | mitochondrion | 21.3 | 24.66 |
| CDY02175 | Canola | mitochondrion | 49.11 | 24.48 |
| CDY35978 | Canola | mitochondrion, plastid | 20.71 | 24.48 |
| CDX87197 | Canola | plastid | 46.15 | 23.71 |
| CDY64931 | Canola | plastid | 21.3 | 23.53 |
| CDY43035 | Canola | plastid | 21.3 | 23.53 |
| CDY42466 | Canola | plastid | 21.3 | 23.53 |
| CDY43820 | Canola | plastid | 21.3 | 22.93 |
| CDY11283 | Canola | nucleus | 40.24 | 22.22 |
| CDY65478 | Canola | endoplasmic reticulum | 26.63 | 21.63 |
| CDY34132 | Canola | nucleus | 29.59 | 19.61 |
| CDX71070 | Canola | mitochondrion | 17.16 | 19.08 |
| CDX80910 | Canola | nucleus | 28.99 | 18.77 |
| CDY31170 | Canola | mitochondrion, nucleus | 14.2 | 18.18 |
| CDX83260 | Canola | mitochondrion | 14.2 | 17.91 |
| CDY19589 | Canola | plastid | 20.71 | 9.38 |
| CDY06395 | Canola | nucleus | 20.12 | 8.54 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | GO:A0A078FRU9 | UniProt:A0A078FRU9 | EnsemblPlants:CDY15876 | ProteinID:CDY15876 |
| ProteinID:CDY15876.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00090234001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44993 |
| PANTHER:PTHR44993:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE5852 |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g12350DBnaA04g12350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRU9]
Coordinates
chrLK032059:+:231062..232162
Molecular Weight (calculated)
16347.4 Da
IEP (calculated)
5.280
GRAVY (calculated)
-0.778
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPDVEYRC FVGGLAWATD ERSLETAFSK FGELVDSKII NDRETGRSRG FGFVTFKDEQ SMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGGRGGGG
101: GYRGGGGGYG GGGGYGGGRR EGGYSGGGGG GYSSRGGGGG GYGGGGRREG GGYGGGDGGG YGGGGGGGW
101: GYRGGGGGYG GGGGYGGGRR EGGYSGGGGG GYSSRGGGGG GYGGGGRREG GGYGGGDGGG YGGGGGGGW
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.