CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11941
CDY20736
CDY36789
CDY49390
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	CDY11941	AT5G56290.1	21798944
AT3G14420.1	CDY20736	AT5G56290.1	21798944
AT3G14420.1	CDY36789	AT5G56290.1	21798944
AT3G14420.1	CDY49390	AT5G56290.1	21798944
AT3G14420.1	CDY66434	AT5G56290.1	21798944
AT3G14420.1	CDY66435	AT5G56290.1	21798944
AT3G14420.1	CDY67858	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98453	Canola	peroxisome	100.0	100.0
Bra027338.1-P	Field mustard	peroxisome	99.46	99.46
CDY39115	Canola	peroxisome	98.38	99.18
CDY33220	Canola	peroxisome	95.68	99.16
AT3G14420.1	Thale cress	peroxisome	97.03	97.82
CDX82483	Canola	peroxisome	97.57	96.78
CDX68646	Canola	peroxisome	93.24	96.64
CDX81437	Canola	peroxisome	93.24	96.64
CDY25425	Canola	peroxisome	93.24	96.64
CDX75771	Canola	peroxisome	95.41	96.19
CDY33221	Canola	peroxisome	95.41	96.19
CDX82484	Canola	peroxisome	95.41	96.19
CDY39114	Canola	peroxisome	95.14	95.91
CDY16268	Canola	peroxisome	77.3	91.96
CDY40891	Canola	peroxisome	77.3	91.96
CDY11082	Canola	peroxisome	77.3	91.96
CDX81438	Canola	peroxisome	77.3	91.96
Solyc07g056540.2.1	Tomato	plastid	92.16	91.91
PGSC0003DMT400071115	Potato	cytosol	90.81	90.57
KRH43857	Soybean	peroxisome	90.0	89.76
VIT_10s0003g03830.t01	Wine grape	peroxisome	90.0	89.52
CDX98451	Canola	peroxisome	73.51	88.89
CDY40892	Canola	peroxisome	41.35	88.44
KRH13608	Soybean	nucleus	88.65	88.41
CDY25424	Canola	peroxisome	79.19	87.46
CDX97573	Canola	peroxisome	90.0	87.4
CDY35618	Canola	peroxisome	78.38	86.05
CDX68645	Canola	peroxisome	78.38	86.05
CDY55631	Canola	peroxisome	85.41	85.87
CDY01535	Canola	peroxisome	84.86	85.33
CDX78843	Canola	peroxisome	80.0	80.43
CDX99474	Canola	peroxisome	79.73	80.16
CDX98452	Canola	cytosol, nucleus, peroxisome	6.49	80.0
GSMUA_Achr4P22900_001	Banana	peroxisome	31.89	76.62
CDX75772	Canola	mitochondrion	54.59	70.14
CDX88442	Canola	cytosol, mitochondrion, plastid	22.16	70.09
CDY70372	Canola	cytosol, mitochondrion, plastid	22.16	70.09
CDY33247	Canola	peroxisome	59.46	60.61
CDY39098	Canola	peroxisome	55.14	60.18
CDY39100	Canola	peroxisome	58.11	59.89
CDX75747	Canola	peroxisome	58.65	59.78
CDX82499	Canola	peroxisome	56.76	58.17
CDY52449	Canola	mitochondrion	34.05	57.8
CDY52266	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	57.84	57.68
CDX86782	Canola	cytosol, peroxisome, plastid	34.59	57.4
CDY52265	Canola	peroxisome	55.14	56.51
CDY35448	Canola	peroxisome	17.03	55.75
CDY13160	Canola	peroxisome	17.03	55.75
CDY49371	Canola	peroxisome	8.65	55.17
CDX96897	Canola	peroxisome	21.89	46.55
CDX97546	Canola	peroxisome	55.68	28.69

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	GO:A0A078EA26	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	EnsemblPlants:CDX97574
ProteinID:CDX97574	ProteinID:CDX97574.1	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181
GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00104789001	InterPro:IPR013785	InterPro:IPR037396	PFAM:PF01070
PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SUPFAM:SSF51395
UniParc:UPI0001BA9021	SEG:seg	:	:	:	:

Description

BnaA05g25050D

Coordinates

chrLK031900:+:377007..379399

Molecular Weight (calculated)

40736.3 Da

IEP (calculated)

9.409

GRAVY (calculated)

-0.094

Length

370 amino acids

Sequence
(BLAST)

001: MEITNVTEYE AIAKEKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTILGFKIS MPIMVAPTAM QKMAHPEGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKMPILVK GVITGEDARI AVQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIT RNHITTEWDT PRPPHPSARL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.