CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11941
CDY20736
CDY36789
CDY49390
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	CDY11941	AT5G56290.1	21798944
AT3G14420.1	CDY20736	AT5G56290.1	21798944
AT3G14420.1	CDY36789	AT5G56290.1	21798944
AT3G14420.1	CDY49390	AT5G56290.1	21798944
AT3G14420.1	CDY66434	AT5G56290.1	21798944
AT3G14420.1	CDY66435	AT5G56290.1	21798944
AT3G14420.1	CDY67858	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68645	Canola	peroxisome	100.0	100.0
CDY16268	Canola	peroxisome	91.99	99.68
CDY40891	Canola	peroxisome	91.99	99.68
CDY11082	Canola	peroxisome	91.99	99.68
CDX81438	Canola	peroxisome	91.99	99.68
CDY25424	Canola	peroxisome	92.88	93.43
CDX98451	Canola	peroxisome	78.34	86.27
CDX98453	Canola	peroxisome	86.05	78.38
CDX97574	Canola	peroxisome	86.05	78.38
CDX82483	Canola	peroxisome	86.65	78.28
CDY39115	Canola	peroxisome	85.16	78.2
AT3G14420.1	Thale cress	peroxisome	85.16	78.2
CDY33221	Canola	peroxisome	85.16	78.2
CDY39114	Canola	peroxisome	84.87	77.93
CDX82484	Canola	peroxisome	84.87	77.93
CDX75771	Canola	peroxisome	84.87	77.93
CDY33220	Canola	peroxisome	82.2	77.59
CDX68646	Canola	peroxisome	81.9	77.31
CDY25425	Canola	peroxisome	81.9	77.31
CDX81437	Canola	peroxisome	81.9	77.31
KRH43857	Soybean	peroxisome	80.71	73.32
Solyc07g056540.2.1	Tomato	plastid	80.71	73.32
PGSC0003DMT400071115	Potato	cytosol	80.42	73.05
VIT_10s0003g03830.t01	Wine grape	peroxisome	80.12	72.58
KRH13608	Soybean	nucleus	79.23	71.97
CDX75772	Canola	mitochondrion	60.24	70.49
CDY55631	Canola	peroxisome	76.26	69.84
CDY01535	Canola	peroxisome	75.67	69.29
CDX97573	Canola	peroxisome	78.34	69.29
CDY70372	Canola	cytosol, mitochondrion, plastid	24.04	69.23
CDX88442	Canola	cytosol, mitochondrion, plastid	24.04	69.23
CDX78843	Canola	peroxisome	71.81	65.76
CDX99474	Canola	peroxisome	71.51	65.49
CDY52449	Canola	mitochondrion	37.98	58.72
CDX86782	Canola	cytosol, peroxisome, plastid	38.58	58.3
CDY35448	Canola	peroxisome	18.1	53.98
CDY13160	Canola	peroxisome	18.1	53.98
CDY40892	Canola	peroxisome	26.41	51.45
CDY33247	Canola	peroxisome	53.12	49.31
CDX75747	Canola	peroxisome	52.82	49.04
CDY39100	Canola	peroxisome	51.93	48.75
CDY39098	Canola	peroxisome	48.07	47.79
CDX82499	Canola	peroxisome	50.45	47.09
CDY52266	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	51.63	46.9
CDY52265	Canola	peroxisome	50.15	46.81
CDY49371	Canola	peroxisome	7.72	44.83
GSMUA_Achr4P22900_001	Banana	peroxisome	19.88	43.51
CDX96897	Canola	peroxisome	20.77	40.23
CDX97546	Canola	peroxisome	51.34	24.09
CDX98452	Canola	cytosol, nucleus, peroxisome	0.0	0.0

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	GO:A0A078HFN4	UniProt:A0A078HFN4	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN
EnsemblPlants:CDY35618	ProteinID:CDY35618	ProteinID:CDY35618.1	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00058976001	InterPro:IPR013785	InterPro:IPR037396
PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80
SUPFAM:SSF51395	UniParc:UPI0004EEAD90	SEG:seg	:	:	:

Description

BnaC01g21400DBnaC01g08080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFN4]

Coordinates

chrLK032356:-:208194..210498

Molecular Weight (calculated)

37199.2 Da

IEP (calculated)

9.514

GRAVY (calculated)

-0.035

Length

337 amino acids

Sequence
(BLAST)

001: MKITNVTEYE AIAKEKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPEGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RKFKPLCVLI LQIHFAPNLT LKNFEGLDLG
201: KMDEANDSGL ASYVAGQIDR TLSWKDVQWL QTITKMPILV KGVLTGEDAR IAVQAGAAGI IVSNHGARQL DYVPATISAL EEVVKATQGR IPVFLDGGVR
301: RGTCERQGPV VSSAFSSLCY DGLIATHMLA HAYRYLT

Best Arabidopsis Sequence Match ( AT3G14415.1 )
(BLAST)

001: MEITNVTEYD AIAKAKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVNKIDM ATTVLGFKIS MPIMVAPTAF QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRKVVEQL VRRAEKAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDIQWLQ TITNMPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRV PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFALAAEGE AGVKKVLQML RDEFELTMAL SGCRSLSEIT RNHIVTEWDT PRHLPRL

Arabidopsis Description

GOX2 [Source:UniProtKB/TrEMBL;Acc:A0A178VD55]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.