CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11941
CDY20736
CDY36789
CDY49390
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	CDY11941	AT5G56290.1	21798944
AT3G14420.1	CDY20736	AT5G56290.1	21798944
AT3G14420.1	CDY36789	AT5G56290.1	21798944
AT3G14420.1	CDY49390	AT5G56290.1	21798944
AT3G14420.1	CDY66434	AT5G56290.1	21798944
AT3G14420.1	CDY66435	AT5G56290.1	21798944
AT3G14420.1	CDY67858	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021556.1-P	Field mustard	peroxisome	100.0	100.0
CDY33220	Canola	peroxisome	97.28	100.0
CDX98453	Canola	peroxisome	99.18	98.38
CDX97574	Canola	peroxisome	99.18	98.38
AT3G14420.1	Thale cress	peroxisome	97.55	97.55
CDY25425	Canola	peroxisome	94.82	97.48
CDX81437	Canola	peroxisome	94.82	97.48
CDX68646	Canola	peroxisome	94.82	97.48
CDX75771	Canola	peroxisome	97.0	97.0
CDY33221	Canola	peroxisome	97.0	97.0
CDX82484	Canola	peroxisome	97.0	97.0
CDY39114	Canola	peroxisome	96.73	96.73
CDX82483	Canola	peroxisome	97.55	95.98
Solyc07g056540.2.1	Tomato	plastid	92.64	91.64
CDY40891	Canola	peroxisome	77.11	91.0
CDX81438	Canola	peroxisome	77.11	91.0
CDY16268	Canola	peroxisome	77.11	91.0
CDY11082	Canola	peroxisome	77.11	91.0
PGSC0003DMT400071115	Potato	cytosol	91.28	90.3
CDY40892	Canola	peroxisome	42.51	90.17
CDX98451	Canola	peroxisome	74.39	89.22
VIT_10s0003g03830.t01	Wine grape	peroxisome	90.19	88.98
KRH43857	Soybean	peroxisome	89.92	88.95
KRH13608	Soybean	nucleus	89.1	88.14
CDX97573	Canola	peroxisome	91.28	87.93
CDY25424	Canola	peroxisome	79.02	86.57
CDY55631	Canola	peroxisome	85.83	85.6
CDX68645	Canola	peroxisome	78.2	85.16
CDY35618	Canola	peroxisome	78.2	85.16
CDY01535	Canola	peroxisome	85.29	85.05
CDX99474	Canola	peroxisome	80.38	80.16
CDX78843	Canola	peroxisome	80.38	80.16
CDX98452	Canola	cytosol, nucleus, peroxisome	6.54	80.0
GSMUA_Achr4P22900_001	Banana	peroxisome	32.43	77.27
CDX88442	Canola	cytosol, mitochondrion, plastid	22.07	69.23
CDY70372	Canola	cytosol, mitochondrion, plastid	22.07	69.23
CDX75772	Canola	mitochondrion	54.22	69.1
CDY33247	Canola	peroxisome	59.95	60.61
CDY39098	Canola	peroxisome	55.59	60.18
CDY39100	Canola	peroxisome	58.58	59.89
CDX75747	Canola	peroxisome	58.58	59.23
CDX82499	Canola	peroxisome	56.68	57.62
CDY52266	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	57.77	57.14
CDY52449	Canola	mitochondrion	33.79	56.88
CDX86782	Canola	cytosol, peroxisome, plastid	34.33	56.5
CDY52265	Canola	peroxisome	55.04	55.96
CDY13160	Canola	peroxisome	17.17	55.75
CDY35448	Canola	peroxisome	17.17	55.75
CDY49371	Canola	peroxisome	8.72	55.17
CDX96897	Canola	peroxisome	22.07	46.55
CDX97546	Canola	peroxisome	55.59	28.41

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	GO:A0A078HKX6	UniProt:A0A078HKX6	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN
EnsemblPlants:CDY39115	ProteinID:CDY39115	ProteinID:CDY39115.1	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00067280001	InterPro:IPR013785	InterPro:IPR037396
PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80
SUPFAM:SSF51395	UniParc:UPI0002544370	SEG:seg	:	:	:

Description

BnaA01g29410DBnaA01g29410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKX6]

Coordinates

chrLK032440:+:247672..249719

Molecular Weight (calculated)

40391.9 Da

IEP (calculated)

9.409

GRAVY (calculated)

-0.069

Length

367 amino acids

Sequence
(BLAST)

001: MEITNVTEYE AIAKEKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTILGFKIS MPIMVAPTAM QKMAHPEGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRKVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITSMPILVK GVITGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIT RNHITTEWDT PRPSARL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.