CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49371	Canola	peroxisome	13.02	81.03
CDX82499	Canola	peroxisome	80.89	80.89
CDY33247	Canola	peroxisome	81.16	80.72
CDY35448	Canola	peroxisome	25.21	80.53
CDY13160	Canola	peroxisome	24.93	79.65
CDY39100	Canola	peroxisome	78.95	79.39
CDY39098	Canola	peroxisome	74.24	79.06
CDX75747	Canola	peroxisome	78.95	78.51
CDY52266	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	78.95	76.82
VIT_09s0002g00810.t01	Wine grape	peroxisome	71.47	70.88
Solyc03g122170.2.1	Tomato	peroxisome	66.48	69.97
PGSC0003DMT400058959	Potato	peroxisome	70.36	69.78
Solyc03g122130.2.1	Tomato	peroxisome	65.37	68.8
PGSC0003DMT400058960	Potato	peroxisome	67.31	66.76
PGSC0003DMT400058920	Potato	peroxisome	66.76	66.39
Solyc03g122140.2.1	Tomato	peroxisome	65.93	65.56
VIT_09s0002g00820.t01	Wine grape	peroxisome, plastid	71.19	61.78
PGSC0003DMT400058950	Potato	peroxisome	61.5	58.89
CDX96897	Canola	peroxisome	27.42	56.9
CDX82484	Canola	peroxisome	57.06	56.13
CDX75771	Canola	peroxisome	57.06	56.13
CDY40892	Canola	peroxisome	26.87	56.07
CDY39114	Canola	peroxisome	56.79	55.86
CDY33221	Canola	peroxisome	56.79	55.86
CDX82483	Canola	peroxisome	57.62	55.76
CDY55631	Canola	peroxisome	56.79	55.71
CDY25425	Canola	peroxisome	54.85	55.46
CDX81437	Canola	peroxisome	54.85	55.46
CDX68646	Canola	peroxisome	54.85	55.46
CDX78843	Canola	peroxisome	56.23	55.16
CDY01535	Canola	peroxisome	56.23	55.16
CDX97574	Canola	peroxisome	56.51	55.14
CDX98453	Canola	peroxisome	56.51	55.14
CDY39115	Canola	peroxisome	55.96	55.04
CDY33220	Canola	peroxisome	54.29	54.9
CDX99474	Canola	peroxisome	55.4	54.35
CDX81438	Canola	peroxisome	45.43	52.73
CDY40891	Canola	peroxisome	45.43	52.73
CDY11082	Canola	peroxisome	45.43	52.73
CDY16268	Canola	peroxisome	45.43	52.73
CDX98451	Canola	peroxisome	44.32	52.29
Solyc03g122150.2.1	Tomato	peroxisome	22.16	52.29
CDX97573	Canola	peroxisome	54.85	51.97
CDY25424	Canola	peroxisome	47.37	51.04
CDX68645	Canola	peroxisome	46.81	50.15
CDY35618	Canola	peroxisome	46.81	50.15
CDX97546	Canola	peroxisome	98.06	49.3
CDX98452	Canola	cytosol, nucleus, peroxisome	3.88	46.67
CDX75772	Canola	mitochondrion	34.63	43.4
CDX88442	Canola	cytosol, mitochondrion, plastid	11.91	36.75
CDY70372	Canola	cytosol, mitochondrion, plastid	11.91	36.75
CDY52449	Canola	mitochondrion	21.88	36.24
CDX86782	Canola	cytosol, peroxisome, plastid	22.16	35.87

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.1	GO:A0A078IMF5	UniProt:A0A078IMF5	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN
EnsemblPlants:CDY52265	ProteinID:CDY52265	ProteinID:CDY52265.1	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00005252001	InterPro:IPR013785	InterPro:IPR037396
PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF67
SUPFAM:SSF51395	UniParc:UPI0004EDCFF4	SEG:seg	:	:	:

Description

BnaC05g52090DBnaC05g52090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMF5]

Coordinates

chrLK033072:-:38668..40920

Molecular Weight (calculated)

39514.3 Da

IEP (calculated)

7.996

GRAVY (calculated)

0.076

Length

361 amino acids

Sequence
(BLAST)

001: MDQIVNVNEF QEMAKRALPK MYYDYFNGGA EDEHTVKENV EAFHRIMFRP RVLVDVSKID MSTSVLGYPI SAPIMIAPVA LLKLAHPEGE IATARAAAAC
101: NTIMIVSYMS SCTIEEVASS CNAVRFLQIY VFKKHEIAQM VIRAEKAGFK AIVLTNAPRI GKREADIKNK MISPQLKNFG SLFPTEVQPI KGSGLETLSS
201: TALDSSFGWK DIDWLRSITK LPILIKGILT REDALKAVEA GVDGIVVSNH GGRQLDYSPA TITVLEEVVH VVRGRIPVLF DGGVRRGSDV FKALALGAQA
301: VIIGRPLAYA LAAKGEDGVK QGIEMLKNEF ELTMALSGCP TIGDITRNHV KTEAERLHSM L

Best Arabidopsis Sequence Match ( AT3G14130.1 )
(BLAST)

001: MDQIVNVDEF QELAKQALPK MYYDFYNGGA EDQHTLNENV QAFRRIMFRP RVLVDVSNID MSTSMLGYPI SAPIMIAPTA MHKLAHPKGE IATAKAAAAC
101: NTIMIVSFMS TCTIEEVASS CNAVRFLQIY VYKRRDVTAQ IVKRAEKAGF KAIVLTVDVP RLGRREADIK NKMISPQLKN FEGLVSTEVR PNEGSGVEAF
201: ASSAFDASLS WKDIEWLRSI TKLPILVKGL LTREDALKAV EAGVDGIVVS NHGARQLDYS PATITVLEEV VHAVKGRIPV LLDGGVRRGT DVFKALALGA
301: QAVLIGRPIV YGLAAKGEDG VKKVIDMLKN EFEITMALSG CPTIDDVTRN HVRTENERIK SML

Arabidopsis Description

GLO4Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.