Factsheet for VIT_09s0002g00810.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g00820.t01	Wine grape	peroxisome, plastid	90.66	79.33
AT3G14150.1	Thale cress	peroxisome	75.82	76.03
Bra021533.1-P	Field mustard	peroxisome	75.27	75.48
AT3G14130.1	Thale cress	peroxisome	75.27	75.48
CDY33247	Canola	peroxisome	75.27	75.48
CDY39100	Canola	peroxisome	73.9	74.93
Bra021535.1-P	Field mustard	peroxisome	74.45	74.66
CDX75747	Canola	peroxisome	74.45	74.66
PGSC0003DMT400058959	Potato	peroxisome	74.45	74.45
Solyc03g122170.2.1	Tomato	peroxisome	70.05	74.34
CDY39098	Canola	peroxisome	68.96	74.04
CDX82499	Canola	peroxisome	73.08	73.68
Bra001536.1-P	Field mustard	peroxisome	72.8	73.41
Solyc03g122130.2.1	Tomato	peroxisome	68.96	73.18
PGSC0003DMT400058960	Potato	peroxisome	72.8	72.8
Bra036980.1-P	Field mustard	peroxisome	11.26	71.93
Solyc03g122140.2.1	Tomato	peroxisome	71.7	71.9
CDY35448	Canola	peroxisome	22.25	71.68
PGSC0003DMT400058920	Potato	peroxisome	71.43	71.63
CDY52265	Canola	peroxisome	70.88	71.47
CDY52266	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.25	70.89
CDY13160	Canola	peroxisome	21.98	70.8
CDY49371	Canola	peroxisome	11.26	70.69
GSMUA_Achr3P01940_001	Banana	peroxisome	70.05	70.05
HORVU2Hr1G030930.2	Barley	peroxisome	68.13	67.76
TraesCS2A01G168400.1	Wheat	peroxisome	68.13	67.76
Os07t0616500-01	Rice	peroxisome	68.13	67.76
TraesCS2D01G175900.1	Wheat	peroxisome	67.86	67.49
OQU90257	Sorghum	peroxisome	67.58	67.03
OQU90259	Sorghum	peroxisome	66.48	65.76
VIT_10s0003g03830.t01	Wine grape	peroxisome	65.11	63.71
PGSC0003DMT400058950	Potato	peroxisome	65.66	63.4
TraesCS5A01G266500.2	Wheat	peroxisome	63.46	63.11
TraesCS5D01G274300.1	Wheat	peroxisome	63.46	63.11
VIT_19s0093g00510.t01	Wine grape	peroxisome	63.74	62.53
TraesCS5B01G266100.1	Wheat	peroxisome	62.64	62.47
Solyc03g122150.2.1	Tomato	peroxisome	26.1	62.09
HORVU6Hr1G051600.1	Barley	peroxisome, plastid	17.58	56.14
Zm00001d006868_P007	Maize	peroxisome	61.81	53.07
KRH25749	Soybean	vacuole	12.09	52.38
TraesCS2B01G194600.3	Wheat	peroxisome	48.35	45.01
CDX97546	Canola	peroxisome	71.98	36.49
Bra027370.1-P	Field mustard	vacuole	71.7	26.07
Zm00001d023759_P001	Maize	mitochondrion, nucleus, peroxisome	14.29	20.0
Zm00001d024312_P001	Maize	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	6.32	19.33
Os03t0786000-01	Rice	plastid	12.64	17.04

Protein Annotations

EntrezGene:100253231	wikigene:100253231	Gene3D:3.20.20.70	MapMan:50.1.1	EMBL:AM428954	InterPro:Aldolase_TIM
InterPro:Alpha-hydoxy_acid_DH_FMN	ProteinID:CAN60338	ProteinID:CAN60338.1	ProteinID:CBI35833	ProteinID:CBI35833.3	UniProt:D7TZN7
InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	EntrezGene:LOC100253231	wikigene:LOC100253231	PFAM:PF01070
PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF102	SUPFAM:SSF51395
TIGR:TC62810	UniParc:UPI00015C925A	ArrayExpress:VIT_09s0002g00810	EnsemblPlantsGene:VIT_09s0002g00810	EnsemblPlants:VIT_09s0002g00810.t01	unigene:Vvi.2092
RefSeq:XP_002270074	RefSeq:XP_002270074.1	RefSeq:XP_019077721.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:547420..552404

Molecular Weight (calculated)

39940.6 Da

IEP (calculated)

7.884

GRAVY (calculated)

0.058

Length

364 amino acids

Sequence
(BLAST)

001: MAAEPVNVNE FQELARQALP KMYYDFFAGG AEDQHTLREN VEAFSRITFQ PRILVDVSKI DMSTTILGYK ISSPIMIAPT SLQKLAHPEG EIATARAAAA
101: CNTIMVLSFM ATCTVEEVAS SCNAVRFLQL YVFKRRDISA QVVQKAERYG FKAIVLTVDT PRLGRREADI KNRMVSPQLK NFEGLLTTDV SNDKGSSLEA
201: LASEIYDASL SWKDIEWLRS ITNLPILIKG VLTCEDAIKA VEVGVSGIIV SNHGARQLDY VPATISALEE VVRAVGGRVP VLLDGGIRRG TDVFKALALG
301: AQAVLVGRPV IYGLAAKGEH GVRRVLEMLK DELEITMALS GCSSVKDISR RHVRTERDRL QSML

Best Arabidopsis Sequence Match ( AT3G14130.1 )
(BLAST)

001: MDQIVNVDEF QELAKQALPK MYYDFYNGGA EDQHTLNENV QAFRRIMFRP RVLVDVSNID MSTSMLGYPI SAPIMIAPTA MHKLAHPKGE IATAKAAAAC
101: NTIMIVSFMS TCTIEEVASS CNAVRFLQIY VYKRRDVTAQ IVKRAEKAGF KAIVLTVDVP RLGRREADIK NKMISPQLKN FEGLVSTEVR PNEGSGVEAF
201: ASSAFDASLS WKDIEWLRSI TKLPILVKGL LTREDALKAV EAGVDGIVVS NHGARQLDYS PATITVLEEV VHAVKGRIPV LLDGGVRRGT DVFKALALGA
301: QAVLIGRPIV YGLAAKGEDG VKKVIDMLKN EFEITMALSG CPTIDDVTRN HVRTENERIK SML

Arabidopsis Description

GLO4Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.