Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
21334471
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P27650_001 | Banana | nucleus | 69.41 | 88.72 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 78.82 | 86.45 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 74.71 | 80.38 |
| Solyc10g051390.1.1 | Tomato | nucleus | 52.94 | 76.27 |
| Solyc10g051380.1.1 | Tomato | nucleus | 58.24 | 76.15 |
| KRH29453 | Soybean | nucleus | 62.35 | 75.71 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 71.18 | 74.69 |
| KRH29451 | Soybean | nucleus | 74.12 | 73.68 |
| KRH29452 | Soybean | nucleus | 67.06 | 73.08 |
| KRH29454 | Soybean | nucleus | 72.35 | 72.35 |
| PGSC0003DMT400084290 | Potato | nucleus | 70.59 | 72.29 |
| PGSC0003DMT400084258 | Potato | nucleus | 70.59 | 72.29 |
| PGSC0003DMT400083014 | Potato | nucleus | 70.59 | 72.29 |
| Zm00001d041246_P001 | Maize | nucleus | 61.18 | 71.72 |
| CDY15876 | Canola | nucleus | 71.18 | 71.6 |
| Solyc01g109660.2.1 | Tomato | extracellular | 73.53 | 71.43 |
| Bra030284.1-P | Field mustard | nucleus | 70.59 | 71.43 |
| CDY72366 | Canola | nucleus | 71.76 | 71.34 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 68.24 | 71.17 |
| Os12t0632000-01 | Rice | nucleus | 67.65 | 70.99 |
| KRH51528 | Soybean | nucleus | 75.88 | 70.88 |
| CDY59763 | Canola | nucleus | 69.41 | 70.66 |
| PGSC0003DMT400001879 | Potato | cytosol | 72.94 | 70.45 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 68.82 | 70.06 |
| TraesCS4A01G293000.1 | Wheat | plastid | 66.47 | 69.75 |
| EES16438 | Sorghum | nucleus | 67.65 | 69.7 |
| CDY70933 | Canola | nucleus | 68.82 | 69.64 |
| Bra031210.1-P | Field mustard | nucleus | 68.82 | 69.64 |
| PGSC0003DMT400084266 | Potato | extracellular | 65.88 | 69.57 |
| Zm00001d031168_P001 | Maize | plastid | 62.94 | 69.03 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 67.06 | 68.67 |
| CDX90323 | Canola | plastid | 66.47 | 68.48 |
| Bra010693.1-P | Field mustard | nucleus | 66.47 | 68.48 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 61.76 | 67.74 |
| KXG37870 | Sorghum | nucleus | 67.65 | 67.65 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 67.65 | 67.65 |
| CDY42616 | Canola | cytosol | 62.35 | 67.52 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 62.94 | 67.3 |
| AT2G21660.1 | Thale cress | nucleus | 69.41 | 67.05 |
| TraesCS5D01G020900.1 | Wheat | plastid | 68.24 | 66.67 |
| CDY41969 | Canola | cytosol | 50.0 | 66.41 |
| KRH60842 | Soybean | mitochondrion | 71.76 | 65.95 |
| AT4G39260.1 | Thale cress | nucleus | 65.29 | 65.68 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 62.35 | 65.43 |
| CDY12133 | Canola | cytosol | 60.59 | 65.19 |
| Bra001972.1-P | Field mustard | nucleus | 62.35 | 64.63 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 61.18 | 64.2 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 61.18 | 64.2 |
| Bra011869.1-P | Field mustard | cytosol | 60.59 | 63.58 |
| CDY46213 | Canola | nucleus | 45.29 | 63.11 |
| CDX71276 | Canola | nucleus | 61.76 | 61.05 |
| Os03t0670700-01 | Rice | nucleus | 61.18 | 53.06 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 53.53 | 52.6 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 28.24 | 48.48 |
| GSMUA_Achr7P02750_001 | Banana | mitochondrion | 35.29 | 40.0 |
| GSMUA_Achr4P16080_001 | Banana | mitochondrion | 35.29 | 31.58 |
| GSMUA_Achr4P03230_001 | Banana | mitochondrion | 47.06 | 31.25 |
| GSMUA_Achr2P19090_001 | Banana | mitochondrion | 18.82 | 30.19 |
| GSMUA_Achr9P07090_001 | Banana | mitochondrion | 41.76 | 29.83 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 37.65 | 28.57 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 28.24 | 28.57 |
| GSMUA_Achr5P26410_001 | Banana | cytosol, mitochondrion, nucleus | 18.24 | 26.96 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 21.76 | 26.62 |
| GSMUA_Achr6P34250_001 | Banana | mitochondrion | 17.06 | 26.36 |
| GSMUA_Achr11P... | Banana | mitochondrion | 20.0 | 25.76 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 47.06 | 25.72 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 28.82 | 25.65 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 30.59 | 25.37 |
| GSMUA_Achr11P... | Banana | mitochondrion | 15.88 | 25.0 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 24.12 | 23.3 |
| GSMUA_Achr8P07380_001 | Banana | mitochondrion | 17.65 | 22.22 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 44.71 | 22.03 |
| GSMUA_Achr5P15860_001 | Banana | plastid | 18.24 | 18.24 |
| GSMUA_Achr2P01230_001 | Banana | nucleus | 20.0 | 10.9 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P30570_001 | EnsemblPlants:GSMUA_Achr3T30570_001 | EnsemblPlantsGene:GSMUA_Achr3G30570_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44993 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000295049C | UniProt:M0SJ71 | MapMan:16.7.2 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G30570_001]
Coordinates
chr3:+:29245821..29246644
Molecular Weight (calculated)
17265.6 Da
IEP (calculated)
7.352
GRAVY (calculated)
-0.872
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASDVEFRC FVGGLAWATD DRTLEQAFSP YGEIIESKII NDRETGRSRG FGFVTFRDEQ SMRDAIEGMN GQNLDGRNIT VNEAQNRRGG GGGGGGFRSG
101: GGGGYGGGGG GGYGGGGGYG MGGRREGGGY SRGGGGGGYG RDRGYGDGGS RFHRGGGGGG GGFSEENWRN
101: GGGGYGGGGG GGYGGGGGYG MGGRREGGGY SRGGGGGGYG RDRGYGDGGS RFHRGGGGGG GGFSEENWRN
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.