Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
15069638
vacuole: 15069638 nucleus: 18022940 nucleus: 18203134 extracellular: 18372294 nucleus: 19621931 plastid: 21433289 nucleus: 26035336 extracellular: 26072143 plasma membrane: 27800704 plastid: 27992503 |
msms PMID:
26072143
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID:
18022940
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
18203134
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
15069638
doi
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041246_P001 | Maize | nucleus | 72.84 | 81.38 |
| Zm00001d031168_P001 | Maize | plastid | 77.16 | 80.65 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 76.54 | 77.99 |
| EES16438 | Sorghum | nucleus | 78.4 | 76.97 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 62.96 | 76.69 |
| Solyc10g051390.1.1 | Tomato | nucleus | 53.7 | 73.73 |
| KXG37870 | Sorghum | nucleus | 76.54 | 72.94 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 70.99 | 70.99 |
| CDY72366 | Canola | nucleus | 73.46 | 69.59 |
| Bra030284.1-P | Field mustard | nucleus | 71.6 | 69.05 |
| CDY41969 | Canola | cytosol | 54.32 | 68.75 |
| CDY15876 | Canola | nucleus | 71.6 | 68.64 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 64.81 | 67.74 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 64.81 | 67.74 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 66.05 | 67.72 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 70.99 | 67.65 |
| KRH29451 | Soybean | nucleus | 70.99 | 67.25 |
| CDY46213 | Canola | nucleus | 50.62 | 67.21 |
| KRH29453 | Soybean | nucleus | 58.02 | 67.14 |
| CDY70933 | Canola | nucleus | 69.14 | 66.67 |
| Bra031210.1-P | Field mustard | nucleus | 69.14 | 66.67 |
| Bra001972.1-P | Field mustard | nucleus | 67.28 | 66.46 |
| Solyc10g051380.1.1 | Tomato | nucleus | 53.09 | 66.15 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 66.05 | 66.05 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 66.05 | 66.05 |
| KRH29452 | Soybean | nucleus | 63.58 | 66.03 |
| CDY59763 | Canola | nucleus | 67.9 | 65.87 |
| CDY42616 | Canola | cytosol | 63.58 | 65.61 |
| CDX90323 | Canola | plastid | 66.67 | 65.45 |
| Bra010693.1-P | Field mustard | nucleus | 66.67 | 65.45 |
| AT4G39260.1 | Thale cress | nucleus | 67.9 | 65.09 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 64.81 | 64.81 |
| AT2G21660.1 | Thale cress | nucleus | 69.14 | 63.64 |
| Solyc01g109660.2.1 | Tomato | extracellular | 68.52 | 63.43 |
| CDX71276 | Canola | nucleus | 67.28 | 63.37 |
| PGSC0003DMT400084266 | Potato | extracellular | 62.96 | 63.35 |
| PGSC0003DMT400001879 | Potato | cytosol | 68.52 | 63.07 |
| Bra011869.1-P | Field mustard | cytosol | 62.96 | 62.96 |
| KRH51528 | Soybean | nucleus | 70.37 | 62.64 |
| KRH29454 | Soybean | nucleus | 65.43 | 62.35 |
| Os03t0670700-01 | Rice | nucleus | 75.31 | 62.24 |
| CDY12133 | Canola | cytosol | 60.49 | 62.03 |
| PGSC0003DMT400083014 | Potato | nucleus | 62.35 | 60.84 |
| PGSC0003DMT400084258 | Potato | nucleus | 62.35 | 60.84 |
| PGSC0003DMT400084290 | Potato | nucleus | 62.35 | 60.84 |
| KRH60842 | Soybean | mitochondrion | 67.9 | 59.46 |
| Os01t0916600-01 | Rice | mitochondrion | 38.27 | 41.33 |
| Os01t0502800-01 | Rice | mitochondrion | 12.35 | 37.74 |
| Os03t0836200-03 | Rice | nucleus | 46.91 | 37.07 |
| Os12t0502200-01 | Rice | mitochondrion | 46.3 | 29.07 |
| Os04t0414300-00 | Rice | mitochondrion | 24.07 | 28.47 |
| Os01t0974701-01 | Rice | mitochondrion | 20.37 | 28.45 |
| Os07t0549800-01 | Rice | mitochondrion | 22.22 | 27.07 |
| Os07t0602600-01 | Rice | mitochondrion | 38.89 | 26.47 |
| Os08t0139000-02 | Rice | mitochondrion | 21.6 | 24.82 |
| Os03t0681900-01 | Rice | nucleus | 43.83 | 23.05 |
| Os10t0321700-01 | Rice | mitochondrion | 45.06 | 23.03 |
| Os03t0278800-00 | Rice | plastid | 23.46 | 21.97 |
| Os04t0583800-01 | Rice | plastid | 8.64 | 11.86 |
| Os02t0730800-01 | Rice | plastid | 23.46 | 9.52 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | EntrezGene:4352868 | ProteinID:ABA99935.1 | EMBL:AK243636 | ProteinID:BAF30363.1 |
| ProteinID:BAT18222.1 | ProteinID:EAZ21319.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os12g0632000 | EnsemblPlants:Os12t0632000-01 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR45040 | UniProt:Q2QLR2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00003E2DB9 | RefSeq:XP_015620018.1 | SEG:seg | : | : |
Description
Glycine-Rich Protein GRP162, a Gly-rich protein encoding 162 amino acids, glycine-rich protein 162Gly-rich protein, Partner protein of RF5, Fertility restoration (Os12t0632000-01)
Coordinates
chr12:+:27060232..27061159
Molecular Weight (calculated)
16084.2 Da
IEP (calculated)
6.733
GRAVY (calculated)
-0.786
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPDVEYRC FVGGLAWATD DRSLEAAFST FGEILESKII NDRETGRSRG FGFVTFSSEQ AMRDAIEGMN GKELDGRNIT VNEAQSRRSG GGGGGGYGQR
101: GGGGGYGGGG GYGGGGGGGY GQRREGGYGG GGGYGGGRGG GGGYGGGYGS RGGGNSDGNW RN
101: GGGGGYGGGG GYGGGGGGGY GQRREGGYGG GGGYGGGRGG GGGYGGGYGS RGGGNSDGNW RN
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGS
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.