Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 5
- plastid 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
18203134
plasma membrane: 18260611 plasma membrane: 18557835 vacuole: 18557835 plasma membrane: 19502382 cytosol: 19685898 plastid: 21433289 extracellular: 24083427 golgi: 25047511 nucleus: 26035336 plasma membrane: 27800704 plastid: 27992503 extracellular: 28232208 |
msms PMID:
18203134
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
19685898
doi
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID:
19502382
doi
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
24083427
doi
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID:
25047511
doi
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0905800-01 | cytosol, cytosol, mitochondrion |
Os05t0402700-01 | cytosol, cytosol, mitochondrion |
Os08t0120600-01 | cytosol, cytosol, mitochondrion |
Os10t0163340-01 | cytosol, cytosol, mitochondrion |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os04t0486600-01 | Rice | plastid | 93.18 | 93.18 |
TraesCS6D01G196300.2 | Wheat | golgi, nucleus | 92.88 | 92.88 |
TraesCS6A01G213700.1 | Wheat | unclear | 92.58 | 92.58 |
Zm00001d051001_P002 | Maize | cytosol | 91.69 | 91.69 |
EES05377 | Sorghum | cytosol | 91.69 | 91.69 |
KXG21112 | Sorghum | cytosol | 90.5 | 90.5 |
Solyc06g071920.2.1 | Tomato | nucleus | 88.43 | 88.43 |
CDY49358 | Canola | cytosol, mitochondrion | 88.13 | 88.39 |
PGSC0003DMT400069357 | Potato | cytosol | 88.13 | 88.13 |
VIT_01s0010g02460.t01 | Wine grape | cytosol | 88.72 | 87.94 |
Bra040213.1-P | Field mustard | cytosol | 88.13 | 87.87 |
Bra016729.1-P | Field mustard | cytosol | 88.13 | 87.61 |
AT3G04120.1 | Thale cress | cytosol | 87.83 | 87.57 |
Bra040146.1-P | Field mustard | cytosol | 87.83 | 87.57 |
Os08t0126300-01 | Rice | cytosol | 87.54 | 87.54 |
PGSC0003DMT400039449 | Potato | extracellular | 87.54 | 87.54 |
Solyc03g111010.2.1 | Tomato | plastid | 87.54 | 87.54 |
GSMUA_Achr11P... | Banana | cytosol | 89.61 | 87.54 |
TraesCS6B01G243700.1 | Wheat | endoplasmic reticulum | 92.88 | 87.43 |
KRG97466 | Soybean | endoplasmic reticulum, nucleus | 88.13 | 87.35 |
Bra026904.1-P | Field mustard | cytosol | 87.54 | 87.28 |
VIT_17s0000g10430.t01 | Wine grape | extracellular | 87.24 | 87.24 |
KRH31426 | Soybean | endoplasmic reticulum | 87.83 | 87.06 |
PGSC0003DMT400044944 | Potato | extracellular | 87.24 | 86.98 |
AT1G13440.1 | Thale cress | cytosol | 87.24 | 86.98 |
Bra019722.1-P | Field mustard | cytosol | 75.67 | 86.73 |
Solyc05g014470.2.1 | Tomato | extracellular, plastid | 86.94 | 86.69 |
HORVU6Hr1G054520.3 | Barley | cytosol, mitochondrion | 92.58 | 85.71 |
CDX92059 | Canola | cytosol, endoplasmic reticulum, peroxisome | 88.13 | 85.34 |
KRH63725 | Soybean | endoplasmic reticulum, nucleus | 85.46 | 85.21 |
KRH63724 | Soybean | nucleus | 85.46 | 85.21 |
KRH54234 | Soybean | endoplasmic reticulum, nucleus | 85.16 | 84.91 |
KRH54227 | Soybean | endoplasmic reticulum, nucleus | 85.16 | 84.91 |
TraesCS7B01G234400.1 | Wheat | cytosol | 86.35 | 84.84 |
CDY42906 | Canola | cytosol | 88.43 | 84.42 |
GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 89.61 | 84.12 |
CDX74199 | Canola | endoplasmic reticulum | 87.54 | 83.81 |
CDX98100 | Canola | cytosol, mitochondrion, peroxisome | 75.67 | 80.19 |
CDY50169 | Canola | cytosol | 88.13 | 79.84 |
CDY21098 | Canola | cytosol | 88.13 | 79.62 |
CDY26651 | Canola | mitochondrion, peroxisome | 75.37 | 76.28 |
CDY30032 | Canola | cytosol | 88.13 | 75.57 |
CDY21135 | Canola | cytosol, mitochondrion, peroxisome, plastid | 75.96 | 75.07 |
GSMUA_Achr11P... | Banana | plasma membrane | 89.32 | 74.88 |
PGSC0003DMT400044945 | Potato | cytosol | 38.28 | 72.88 |
CDY16090 | Canola | cytoskeleton, cytosol, peroxisome | 87.83 | 68.84 |
CDY29987 | Canola | cytosol, peroxisome, plastid | 75.96 | 68.09 |
Zm00001d017121_P001 | Maize | plastid | 91.99 | 60.78 |
Os02t0171100-01 | Rice | extracellular, plastid | 73.29 | 60.1 |
Os06t0666600-01 | Rice | extracellular, plastid | 73.29 | 59.52 |
KRH37937 | Soybean | plastid | 13.65 | 52.27 |
Os04t0459500-02 | Rice | plastid | 45.7 | 38.31 |
Os03t0129300-01 | Rice | extracellular, plastid | 48.07 | 36.49 |
Protein Annotations
Description
glyceraldehydephosphate dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, cytosolic GAPDH1, cytosolic glyceraldehyde-3-phosphate dehydrogenase 1Similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 (EC 1.2.1.12). (Os02t0601300-01)
Coordinates
chr2:+:23527139..23530459
Molecular Weight (calculated)
36569.9 Da
IEP (calculated)
8.074
GRAVY (calculated)
-0.080
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKIKIGING FGRIGRLVAR VALQSEDVEL VAVNDPFITT EYMTYMFKYD TVHGQWKHHE VKVKDSKTLI FGTKEVAVFG CRNPEEIPWA AAGAEYVVES
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNEK EYKSDVNIVS NASCTTNCLA PLAKVINDRF GIVEGLMTTV HAITATQKTV DGPSMKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPALNGKL TGMAFRVPTV DVSVVDLTVR LEKPASYDQI KAAIKEEAEG KLKGILGYVE EDLVSTDFQG DSRSSIFDAK
301: AGIALSDTFV KLVSWYDNEW GYSTRVIDLI RHMHSTN
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNEK EYKSDVNIVS NASCTTNCLA PLAKVINDRF GIVEGLMTTV HAITATQKTV DGPSMKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPALNGKL TGMAFRVPTV DVSVVDLTVR LEKPASYDQI KAAIKEEAEG KLKGILGYVE EDLVSTDFQG DSRSSIFDAK
301: AGIALSDTFV KLVSWYDNEW GYSTRVIDLI RHMHSTN
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.