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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 5
  • plastid 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 18203134
plasma membrane: 18260611
plasma membrane: 18557835
vacuole: 18557835
plasma membrane: 19502382
cytosol: 19685898
plastid: 21433289
extracellular: 24083427
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 18203134 doi
G Li, BR Nallamilli, F Tan, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19685898 doi
KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os04t0486600-01 Rice plastid 93.18 93.18
TraesCS6D01G196300.2 Wheat golgi, nucleus 92.88 92.88
TraesCS6A01G213700.1 Wheat unclear 92.58 92.58
Zm00001d051001_P002 Maize cytosol 91.69 91.69
EES05377 Sorghum cytosol 91.69 91.69
KXG21112 Sorghum cytosol 90.5 90.5
Solyc06g071920.2.1 Tomato nucleus 88.43 88.43
CDY49358 Canola cytosol, mitochondrion 88.13 88.39
PGSC0003DMT400069357 Potato cytosol 88.13 88.13
VIT_01s0010g02460.t01 Wine grape cytosol 88.72 87.94
Bra040213.1-P Field mustard cytosol 88.13 87.87
Bra016729.1-P Field mustard cytosol 88.13 87.61
AT3G04120.1 Thale cress cytosol 87.83 87.57
Bra040146.1-P Field mustard cytosol 87.83 87.57
Os08t0126300-01 Rice cytosol 87.54 87.54
PGSC0003DMT400039449 Potato extracellular 87.54 87.54
Solyc03g111010.2.1 Tomato plastid 87.54 87.54
GSMUA_Achr11P... Banana cytosol 89.61 87.54
TraesCS6B01G243700.1 Wheat endoplasmic reticulum 92.88 87.43
KRG97466 Soybean endoplasmic reticulum, nucleus 88.13 87.35
Bra026904.1-P Field mustard cytosol 87.54 87.28
VIT_17s0000g10430.t01 Wine grape extracellular 87.24 87.24
KRH31426 Soybean endoplasmic reticulum 87.83 87.06
PGSC0003DMT400044944 Potato extracellular 87.24 86.98
AT1G13440.1 Thale cress cytosol 87.24 86.98
Bra019722.1-P Field mustard cytosol 75.67 86.73
Solyc05g014470.2.1 Tomato extracellular, plastid 86.94 86.69
HORVU6Hr1G054520.3 Barley cytosol, mitochondrion 92.58 85.71
CDX92059 Canola cytosol, endoplasmic reticulum, peroxisome 88.13 85.34
KRH63725 Soybean endoplasmic reticulum, nucleus 85.46 85.21
KRH63724 Soybean nucleus 85.46 85.21
KRH54234 Soybean endoplasmic reticulum, nucleus 85.16 84.91
KRH54227 Soybean endoplasmic reticulum, nucleus 85.16 84.91
TraesCS7B01G234400.1 Wheat cytosol 86.35 84.84
CDY42906 Canola cytosol 88.43 84.42
GSMUA_AchrUn_... Banana endoplasmic reticulum 89.61 84.12
CDX74199 Canola endoplasmic reticulum 87.54 83.81
CDX98100 Canola cytosol, mitochondrion, peroxisome 75.67 80.19
CDY50169 Canola cytosol 88.13 79.84
CDY21098 Canola cytosol 88.13 79.62
CDY26651 Canola mitochondrion, peroxisome 75.37 76.28
CDY30032 Canola cytosol 88.13 75.57
CDY21135 Canola cytosol, mitochondrion, peroxisome, plastid 75.96 75.07
GSMUA_Achr11P... Banana plasma membrane 89.32 74.88
PGSC0003DMT400044945 Potato cytosol 38.28 72.88
CDY16090 Canola cytoskeleton, cytosol, peroxisome 87.83 68.84
CDY29987 Canola cytosol, peroxisome, plastid 75.96 68.09
Zm00001d017121_P001 Maize plastid 91.99 60.78
Os02t0171100-01 Rice extracellular, plastid 73.29 60.1
Os06t0666600-01 Rice extracellular, plastid 73.29 59.52
KRH37937 Soybean plastid 13.65 52.27
Os04t0459500-02 Rice plastid 45.7 38.31
Os03t0129300-01 Rice extracellular, plastid 48.07 36.49
Protein Annotations
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12MapMan:2.1.1.4.1Gene3D:3.30.360.10Gene3D:3.40.50.720EntrezGene:4329892
UniProt:A0A2H4N016EMBL:AK099086ProteinID:BAD22157.1ProteinID:BAF09262.1ProteinID:BAS79611.1ProteinID:EEE57317.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004365GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0006006GO:GO:0006091
GO:GO:0006096GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058
GO:GO:0009987GO:GO:0016491GO:GO:0016620GO:GO:0050661GO:GO:0051287GO:GO:0055114
EMBL:GQ848032InterPro:GlycerAld/Erythrose_P_DHInterPro:GlycerAld_3-P_DH_ASInterPro:GlycerAld_3-P_DH_NAD(P)-bdInterPro:GlycerAld_3-P_DH_catInterPro:Glyceraldehyde-3-P_DH_1
EMBL:KY038497InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os02g0601300EnsemblPlants:Os02t0601300-01PFAM:PF00044PFAM:PF02800
PIRSF:PIRSF000149PRINTS:PR00078ScanProsite:PS00071PANTHER:PTHR10836PANTHER:PTHR10836:SF63UniProt:Q6K5G8
SMART:SM00846SUPFAM:SSF51735SUPFAM:SSF55347TIGRFAMs:TIGR01534UniParc:UPI0000377DCFRefSeq:XP_015625382.1
SEG:seg:::::
Description
glyceraldehydephosphate dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, cytosolic GAPDH1, cytosolic glyceraldehyde-3-phosphate dehydrogenase 1Similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 (EC 1.2.1.12). (Os02t0601300-01)
Coordinates
chr2:+:23527139..23530459
Molecular Weight (calculated)
36569.9 Da
IEP (calculated)
8.074
GRAVY (calculated)
-0.080
Length
337 amino acids
Sequence
(BLAST)
001: MGKIKIGING FGRIGRLVAR VALQSEDVEL VAVNDPFITT EYMTYMFKYD TVHGQWKHHE VKVKDSKTLI FGTKEVAVFG CRNPEEIPWA AAGAEYVVES
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNEK EYKSDVNIVS NASCTTNCLA PLAKVINDRF GIVEGLMTTV HAITATQKTV DGPSMKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPALNGKL TGMAFRVPTV DVSVVDLTVR LEKPASYDQI KAAIKEEAEG KLKGILGYVE EDLVSTDFQG DSRSSIFDAK
301: AGIALSDTFV KLVSWYDNEW GYSTRVIDLI RHMHSTN
Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.