CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04064	cytosol, cytosol, mitochondrion
EES06798	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	EES04064	AT2G36460.1	23316205
AT1G13440.1	EES06798	AT2G36460.1	23316205
AT1G13440.1	EES04064	AT2G36460.1	23316205
AT1G13440.1	EES06798	AT2G36460.1	23316205
AT3G04120.1	EES04064	AT2G36460.1	23316205
AT3G04120.1	EES06798	AT2G36460.1	23316205
AT3G04120.1	EES04064	AT2G36460.1	23316205
AT3G04120.1	EES06798	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051001_P002	Maize	cytosol	97.63	97.63
KXG21112	Sorghum	cytosol	94.07	94.07
Os02t0601300-01	Rice	plasma membrane	91.69	91.69
TraesCS6D01G196300.2	Wheat	golgi, nucleus	91.69	91.69
TraesCS6A01G213700.1	Wheat	unclear	91.1	91.1
PGSC0003DMT400039449	Potato	extracellular	88.13	88.13
VIT_01s0010g02460.t01	Wine grape	cytosol	88.72	87.94
KXG24320	Sorghum	cytosol	87.83	87.83
Solyc03g111010.2.1	Tomato	plastid	87.83	87.83
CDY49358	Canola	cytosol, mitochondrion	87.54	87.8
Bra040213.1-P	Field mustard	cytosol	87.83	87.57
KXG20851	Sorghum	cytosol	87.24	87.24
Bra016729.1-P	Field mustard	cytosol	87.54	87.02
Bra040146.1-P	Field mustard	cytosol	87.24	86.98
Solyc06g071920.2.1	Tomato	nucleus	86.94	86.94
KRH31426	Soybean	endoplasmic reticulum	87.54	86.76
KRG97466	Soybean	endoplasmic reticulum, nucleus	87.54	86.76
GSMUA_Achr11P...	Banana	cytosol	88.72	86.67
Bra026904.1-P	Field mustard	cytosol	86.65	86.39
AT1G13440.1	Thale cress	cytosol	86.65	86.39
PGSC0003DMT400069357	Potato	cytosol	86.35	86.35
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	91.69	86.31
AT3G04120.1	Thale cress	cytosol	86.35	86.09
Bra019722.1-P	Field mustard	cytosol	75.07	86.05
VIT_17s0000g10430.t01	Wine grape	extracellular	85.76	85.76
PGSC0003DMT400044944	Potato	extracellular	85.76	85.5
Solyc05g014470.2.1	Tomato	extracellular, plastid	85.46	85.21
OQU77090	Sorghum	cytosol	56.08	85.14
KRH63724	Soybean	nucleus	85.16	84.91
KRH54227	Soybean	endoplasmic reticulum, nucleus	84.87	84.62
KRH54234	Soybean	endoplasmic reticulum, nucleus	84.87	84.62
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	91.39	84.62
KRH63725	Soybean	endoplasmic reticulum, nucleus	84.87	84.62
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	87.24	84.48
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	89.61	84.12
TraesCS7B01G234400.1	Wheat	cytosol	85.46	83.97
CDY42906	Canola	cytosol	87.54	83.57
CDX74199	Canola	endoplasmic reticulum	87.24	83.52
CDX98100	Canola	cytosol, mitochondrion, peroxisome	75.07	79.56
CDY50169	Canola	cytosol	87.54	79.3
CDY21098	Canola	cytosol	87.54	79.09
CDY26651	Canola	mitochondrion, peroxisome	74.48	75.38
CDY30032	Canola	cytosol	87.54	75.06
OQU77089	Sorghum	cytosol	30.27	75.0
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	75.67	74.78
GSMUA_Achr11P...	Banana	plasma membrane	88.72	74.38
PGSC0003DMT400044945	Potato	cytosol	38.28	72.88
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	86.94	68.14
CDY29987	Canola	cytosol, peroxisome, plastid	75.37	67.55
Zm00001d017121_P001	Maize	plastid	97.92	64.71
EES04595	Sorghum	plastid	73.59	60.05
KRH37937	Soybean	plastid	12.76	48.86
KXG19697	Sorghum	cytosol	11.57	40.21
KXG26468	Sorghum	plastid	48.37	39.0
KXG40264	Sorghum	plastid	47.77	36.26
KXG28726	Sorghum	cytosol	16.02	35.53

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	EntrezGene:8056489
UniProt:C5XX52	EnsemblPlants:EES05377	ProteinID:EES05377	ProteinID:EES05377.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044
PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63
MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846	EnsemblPlantsGene:SORBI_3004G205100
SUPFAM:SSF51735	SUPFAM:SSF55347	unigene:Sbi.18146	TIGRFAMs:TIGR01534	UniParc:UPI0001A85256	RefSeq:XP_002452401.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:55645511..55649270

Molecular Weight (calculated)

36347.4 Da

IEP (calculated)

7.146

GRAVY (calculated)

-0.065

Length

337 amino acids

Sequence
(BLAST)

001: MAKIKIGING FGRIGRLVAR VALQSDDVEL VAVNDPFITT DYMTYMFKYD TVHGQWKHHE VKVKDSKTLL FGEKEVAVFG SRNPEEIPWG SVGADYVVES
101: TGVFTDQEKA AAHLKGGAKK VVISAPSKDA PMFVVGVNEK EYKSDINIVS NASCTTNCLA PLAKVINDKF GIVEGLMTTV HAITATQKTV DGPSAKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPVLNGKL TGMAFRVPTV DVSVVDLTVR LEKSATYDEI KAAVKAEAEG SLKGILGYVD EDLVSTDFQG DSRSSIFDAK
301: AGIALNGNFV KLVSWYDNEW GYSTRVVDLI RHMSSTN

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.