CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04064	cytosol, cytosol, mitochondrion
EES06798	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	EES04064	AT2G36460.1	23316205
AT1G13440.1	EES06798	AT2G36460.1	23316205
AT1G13440.1	EES04064	AT2G36460.1	23316205
AT1G13440.1	EES06798	AT2G36460.1	23316205
AT3G04120.1	EES04064	AT2G36460.1	23316205
AT3G04120.1	EES06798	AT2G36460.1	23316205
AT3G04120.1	EES04064	AT2G36460.1	23316205
AT3G04120.1	EES06798	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20851	Sorghum	cytosol	99.41	99.41
Zm00001d049641_P001	Maize	plasma membrane, plastid	97.33	97.33
TraesCS7D01G309500.1	Wheat	cytosol	94.66	94.66
TraesCS7B01G213300.1	Wheat	golgi	94.66	94.66
Zm00001d035156_P003	Maize	cytosol	97.33	93.98
OQU77090	Sorghum	cytosol	61.72	93.69
Os08t0126300-01	Rice	cytosol	93.18	93.18
OQU77089	Sorghum	cytosol	36.2	89.71
TraesCS7A01G313100.1	Wheat	cytosol	90.8	88.7
EES05377	Sorghum	cytosol	87.83	87.83
Bra016729.1-P	Field mustard	cytosol	87.54	87.02
Bra026904.1-P	Field mustard	cytosol	87.24	86.98
CDY49358	Canola	cytosol, mitochondrion	86.65	86.9
Bra040213.1-P	Field mustard	cytosol	86.65	86.39
AT3G04120.1	Thale cress	cytosol	86.05	85.8
Bra040146.1-P	Field mustard	cytosol	86.05	85.8
Solyc06g071920.2.1	Tomato	nucleus	85.76	85.76
KRG97466	Soybean	endoplasmic reticulum, nucleus	86.35	85.59
AT1G13440.1	Thale cress	cytosol	85.76	85.5
KXG21112	Sorghum	cytosol	85.46	85.46
VIT_01s0010g02460.t01	Wine grape	cytosol	86.05	85.29
KRH31426	Soybean	endoplasmic reticulum	86.05	85.29
PGSC0003DMT400044944	Potato	extracellular	85.46	85.21
PGSC0003DMT400069357	Potato	cytosol	85.16	85.16
Bra019722.1-P	Field mustard	cytosol	74.18	85.03
Solyc05g014470.2.1	Tomato	extracellular, plastid	85.16	84.91
KRH63724	Soybean	nucleus	84.27	84.02
VIT_17s0000g10430.t01	Wine grape	extracellular	83.98	83.98
KRH63725	Soybean	endoplasmic reticulum, nucleus	83.98	83.73
PGSC0003DMT400039449	Potato	extracellular	83.68	83.68
Solyc03g111010.2.1	Tomato	plastid	83.68	83.68
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	86.35	83.62
KRH54234	Soybean	endoplasmic reticulum, nucleus	83.68	83.43
KRH54227	Soybean	endoplasmic reticulum, nucleus	83.68	83.43
CDY42906	Canola	cytosol	86.35	82.44
CDX74199	Canola	endoplasmic reticulum	86.05	82.39
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	94.66	81.17
CDY50169	Canola	cytosol	87.24	79.03
CDY21098	Canola	cytosol	87.24	78.82
CDX98100	Canola	cytosol, mitochondrion, peroxisome	74.18	78.62
CDY26651	Canola	mitochondrion, peroxisome	74.78	75.68
CDY30032	Canola	cytosol	86.94	74.55
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	74.18	73.31
PGSC0003DMT400044945	Potato	cytosol	36.5	69.49
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	87.54	68.6
CDY29987	Canola	cytosol, peroxisome, plastid	74.18	66.49
EES04595	Sorghum	plastid	73.89	60.29
KRH37937	Soybean	plastid	13.06	50.0
KXG19697	Sorghum	cytosol	11.57	40.21
KXG26468	Sorghum	plastid	46.88	37.8
KXG40264	Sorghum	plastid	46.88	35.59
KXG28726	Sorghum	cytosol	16.02	35.53

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	UniProt:A0A1B6PF49
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
EnsemblPlants:KXG24320	ProteinID:KXG24320	ProteinID:KXG24320.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF58	MetaCyc:PWY-1042
MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846	EnsemblPlantsGene:SORBI_3007G025400	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI0001C80D25	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:2311896..2317187

Molecular Weight (calculated)

36543.8 Da

IEP (calculated)

6.891

GRAVY (calculated)

-0.080

Length

337 amino acids

Sequence
(BLAST)

001: MGKIKIGING FGRIGRLVAR VALQSEDVEL VAVNDPFITT DYMTYMFKYD TVHGHWKHSE ITLKDSKTLL FGEKPVTVFG IRNPEEIPWG EAGADYVVES
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNED KYTSDINIVS NASCTTNCLA PLAKVIHDNF GIIEGLMTTV HAITATQKTV DGPSAKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPDLNGKL TGMSFRVPTV DVSVVDLTVR IEKGASYEDI KKAIKAASEG PLKGIMGYVE EDLVSTDFVG DSRSSIFDAK
301: AGIALNDNFI KLVSWYDNEW GYSNRVVDLI RHMFKTQ

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.