Factsheet for Os08t0126300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0905800-01	cytosol, cytosol, mitochondrion
Os05t0402700-01	cytosol, cytosol, mitochondrion
Os08t0120600-01	cytosol, cytosol, mitochondrion
Os10t0163340-01	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	Os01t0905800-01	AT2G36460.1	23316205
AT1G13440.1	Os05t0402700-01	AT2G36460.1	23316205
AT1G13440.1	Os08t0120600-01	AT2G36460.1	23316205
AT1G13440.1	Os10t0163340-01	AT2G36460.1	23316205
AT1G13440.1	Os01t0905800-01	AT2G36460.1	23316205
AT1G13440.1	Os05t0402700-01	AT2G36460.1	23316205
AT1G13440.1	Os08t0120600-01	AT2G36460.1	23316205
AT1G13440.1	Os10t0163340-01	AT2G36460.1	23316205
AT3G04120.1	Os01t0905800-01	AT2G36460.1	23316205
AT3G04120.1	Os05t0402700-01	AT2G36460.1	23316205
AT3G04120.1	Os08t0120600-01	AT2G36460.1	23316205
AT3G04120.1	Os10t0163340-01	AT2G36460.1	23316205
AT3G04120.1	Os01t0905800-01	AT2G36460.1	23316205
AT3G04120.1	Os05t0402700-01	AT2G36460.1	23316205
AT3G04120.1	Os08t0120600-01	AT2G36460.1	23316205
AT3G04120.1	Os10t0163340-01	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24320	Sorghum	cytosol	93.18	93.18
KXG20851	Sorghum	cytosol	93.18	93.18
TraesCS7D01G309500.1	Wheat	cytosol	92.58	92.58
TraesCS7B01G213300.1	Wheat	golgi	92.58	92.58
Zm00001d049641_P001	Maize	plasma membrane, plastid	92.28	92.28
Zm00001d035156_P003	Maize	cytosol	92.88	89.68
OQU77090	Sorghum	cytosol	58.75	89.19
Os04t0486600-01	Rice	plastid	88.72	88.72
Os02t0601300-01	Rice	plasma membrane	87.54	87.54
TraesCS7A01G313100.1	Wheat	cytosol	88.72	86.67
VIT_01s0010g02460.t01	Wine grape	cytosol	86.94	86.18
CDY49358	Canola	cytosol, mitochondrion	85.76	86.01
KRG97466	Soybean	endoplasmic reticulum, nucleus	86.65	85.88
AT3G04120.1	Thale cress	cytosol	86.05	85.8
Bra040213.1-P	Field mustard	cytosol	85.76	85.5
Bra026904.1-P	Field mustard	cytosol	85.76	85.5
Solyc06g071920.2.1	Tomato	nucleus	85.46	85.46
Bra016729.1-P	Field mustard	cytosol	85.76	85.25
KRH31426	Soybean	endoplasmic reticulum	85.76	85.0
PGSC0003DMT400069357	Potato	cytosol	84.87	84.87
AT1G13440.1	Thale cress	cytosol	84.87	84.62
Bra040146.1-P	Field mustard	cytosol	84.87	84.62
PGSC0003DMT400044944	Potato	extracellular	84.57	84.32
VIT_17s0000g10430.t01	Wine grape	extracellular	84.27	84.27
Solyc05g014470.2.1	Tomato	extracellular, plastid	84.27	84.02
Bra019722.1-P	Field mustard	cytosol	72.7	83.33
KRH63724	Soybean	nucleus	83.38	83.14
KRH63725	Soybean	endoplasmic reticulum, nucleus	83.38	83.14
Solyc03g111010.2.1	Tomato	plastid	83.09	83.09
PGSC0003DMT400039449	Potato	extracellular	83.09	83.09
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	85.46	82.76
KRH54234	Soybean	endoplasmic reticulum, nucleus	82.79	82.54
KRH54227	Soybean	endoplasmic reticulum, nucleus	82.79	82.54
CDY42906	Canola	cytosol	86.05	82.15
CDX74199	Canola	endoplasmic reticulum	85.16	81.53
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	92.58	79.39
CDY50169	Canola	cytosol	86.05	77.96
CDY21098	Canola	cytosol	86.05	77.75
CDX98100	Canola	cytosol, mitochondrion, peroxisome	72.7	77.04
CDY26651	Canola	mitochondrion, peroxisome	73.29	74.17
CDY30032	Canola	cytosol	85.46	73.28
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	73.29	72.43
PGSC0003DMT400044945	Potato	cytosol	37.39	71.19
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	85.46	66.98
CDY29987	Canola	cytosol, peroxisome, plastid	73.29	65.69
Os02t0171100-01	Rice	extracellular, plastid	72.7	59.61
Os06t0666600-01	Rice	extracellular, plastid	71.22	57.83
KRH37937	Soybean	plastid	12.76	48.86
Os04t0459500-02	Rice	plastid	45.7	38.31
Os03t0129300-01	Rice	extracellular, plastid	47.77	36.26

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	PDB:3E5R
PDB:3E6A	PDB:3V1Y	EntrezGene:4344564	EMBL:AK071097	EMBL:AK103777	ProteinID:BAD08850.1
ProteinID:BAF22811.1	ProteinID:BAT03659.1	ProteinID:EAZ41375.1	EMBL:EF122472	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004365	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0006006	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	EMBL:GQ848031	InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:I3QD45	EMBL:JF969200
EMBL:JN848809	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os08g0126300	EnsemblPlants:Os08t0126300-01	PFAM:PF00044	PFAM:PF02800
PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF58	UniProt:Q0J8A4
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000023AC37	RefSeq:XP_015650130.1
SEG:seg	:	:	:	:	:

Description

GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLICSimilar to Glyceraldehyde-3-phosphate dehydrogenase (Fragment). (Os08t0126300-01);Similar to Glyceraldehyde-3-phosphate dehydrogenase (Fragment). (Os08t0126300-02);Similar to cDNA clone:J023080G06, full insert sequence. (Os08t0126300-03)

Coordinates

chr8:+:1525411..1529192

Molecular Weight (calculated)

36414.6 Da

IEP (calculated)

7.129

GRAVY (calculated)

-0.062

Length

337 amino acids

Sequence
(BLAST)

001: MGKIKIGING FGRIGRLVAR VALQSEDVEL VAVNDPFITT DYMTYMFKYD TVHGQWKHSD IKIKDSKTLL LGEKPVTVFG IRNPDEIPWA EAGAEYVVES
101: TGVFTDKEKA AAHLKGGAKK VVISAPSKDA PMFVCGVNED KYTSDIDIVS NASCTTNCLA PLAKVIHDNF GIIEGLMTTV HAITATQKTV DGPSSKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPDLNGKL TGMSFRVPTV DVSVVDLTVR IEKAASYDAI KSAIKSASEG KLKGIIGYVE EDLVSTDFVG DSRSSIFDAK
301: AGIALNDNFV KLVAWYDNEW GYSNRVIDLI RHMAKTQ

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.