Factsheet for Bra019722.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017233.1-P	cytosol, cytosol, mitochondrion
Bra017234.1-P	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	Bra017233.1-P	AT2G36460.1	23316205
AT1G13440.1	Bra017234.1-P	AT2G36460.1	23316205
AT1G13440.1	Bra017233.1-P	AT2G36460.1	23316205
AT1G13440.1	Bra017234.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017233.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017234.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017233.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017234.1-P	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98100	Canola	cytosol, mitochondrion, peroxisome	100.0	92.45
Bra016729.1-P	Field mustard	cytosol	99.32	86.14
Bra026904.1-P	Field mustard	cytosol	98.3	85.5
AT3G04120.1	Thale cress	cytosol	96.6	84.02
Bra040213.1-P	Field mustard	cytosol	96.6	84.02
AT1G13440.1	Thale cress	cytosol	96.6	84.02
Bra040146.1-P	Field mustard	cytosol	95.58	83.14
PGSC0003DMT400044944	Potato	extracellular	90.82	78.99
Solyc05g014470.2.1	Tomato	extracellular, plastid	90.48	78.7
KRG97466	Soybean	endoplasmic reticulum, nucleus	89.8	77.65
VIT_17s0000g10430.t01	Wine grape	extracellular	88.44	77.15
Os04t0486600-01	Rice	plastid	88.1	76.85
KRH31426	Soybean	endoplasmic reticulum	88.78	76.76
OQU77090	Sorghum	cytosol	57.14	75.68
Os02t0601300-01	Rice	plasma membrane	86.73	75.67
KRH63724	Soybean	nucleus	86.73	75.44
KRH54234	Soybean	endoplasmic reticulum, nucleus	86.73	75.44
KRH63725	Soybean	endoplasmic reticulum, nucleus	86.39	75.15
TraesCS7B01G213300.1	Wheat	golgi	86.05	75.07
EES05377	Sorghum	cytosol	86.05	75.07
TraesCS7D01G309500.1	Wheat	cytosol	86.05	75.07
KRH54227	Soybean	endoplasmic reticulum, nucleus	86.05	74.85
CDY30032	Canola	cytosol	99.66	74.55
Zm00001d051001_P002	Maize	cytosol	85.37	74.48
TraesCS6D01G196300.2	Wheat	golgi, nucleus	85.37	74.48
TraesCS6A01G213700.1	Wheat	unclear	85.03	74.18
KXG24320	Sorghum	cytosol	85.03	74.18
KXG21112	Sorghum	cytosol	84.69	73.89
KXG20851	Sorghum	cytosol	84.35	73.59
Zm00001d049641_P001	Maize	plasma membrane, plastid	84.01	73.29
PGSC0003DMT400044945	Potato	cytosol	43.88	72.88
Os08t0126300-01	Rice	cytosol	83.33	72.7
Zm00001d035156_P003	Maize	cytosol	84.35	71.06
TraesCS7A01G313100.1	Wheat	cytosol	82.65	70.43
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	85.37	70.11
TraesCS7B01G234400.1	Wheat	cytosol	79.93	68.51
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	84.69	68.41
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	86.05	64.38
GSMUA_Achr2P02610_001	Banana	cytosol	14.29	54.55
GSMUA_Achr2P02600_001	Banana	cytosol	10.54	53.45
Zm00001d017121_P001	Maize	plastid	85.37	49.22
Bra008416.1-P	Field mustard	plastid	69.39	49.16
Bra026068.1-P	Field mustard	plastid	69.39	48.11
Bra003606.1-P	Field mustard	plastid	69.39	47.78
KRH37937	Soybean	plastid	12.24	40.91
Bra019797.1-P	Field mustard	plastid	44.9	33.08
Bra026948.1-P	Field mustard	plastid	43.88	32.33
Bra025219.1-P	Field mustard	plastid	41.5	32.11
Bra034927.1-P	Field mustard	plastid	45.92	30.13
Bra032939.1-P	Field mustard	plastid	33.67	29.64

Protein Annotations

Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:50.1.2	EnsemblPlantsGene:Bra019722	EnsemblPlants:Bra019722.1	EnsemblPlants:Bra019722.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016620	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	UniProt:M4DT79	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836
PANTHER:PTHR10836:SF63	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI000253ED82	SEG:seg

Description

AT1G13440 (E=1e-101) GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase

Coordinates

chrA06:-:4778686..4780413

Molecular Weight (calculated)

32544.0 Da

IEP (calculated)

6.265

GRAVY (calculated)

-0.189

Length

294 amino acids

Sequence
(BLAST)

001: MADKKIKIGI NGFGRIGRLV ARVILQRNDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKVKDEKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLNI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RVVDLTVRLE KAATYDEIKK AIKEESEGKL KGILGYTEDD VVSTDFVGDN RSSIFDAKAG IALSDNFVKL VSWYDNEWGY STRVVDLIIH MSKA

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.