Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
extracellular:
19786127
plastid: 22160430 golgi: 23128297 golgi: 25769308 nucleus: 26228564 nucleus: 26579155 plasma membrane: 26897580 |
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
msms PMID:
26897580
doi
College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu Province, 210095, People's Republic of China., College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu Province, 210095, People's Republic of China. xhzhan@njau.edu.cn.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS3A01G391100.1 | cytosol, cytosol, mitochondrion |
TraesCS3A01G391500.1 | cytosol, cytosol, mitochondrion |
TraesCS3B01G422900.1 | cytosol, cytosol, mitochondrion |
TraesCS3B01G423200.1 | cytosol, cytosol, mitochondrion |
TraesCS3D01G383700.1 | cytosol, cytosol, mitochondrion |
TraesCS3D01G384000.1 | cytosol, cytosol, mitochondrion |
TraesCS3D01G384100.2 | cytosol, cytosol, mitochondrion |
TraesCS5A01G009400.1 | cytosol, cytosol, mitochondrion |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6A01G213700.1 | Wheat | unclear | 99.41 | 99.41 |
TraesCS6B01G243700.1 | Wheat | endoplasmic reticulum | 100.0 | 94.13 |
Os02t0601300-01 | Rice | plasma membrane | 92.88 | 92.88 |
Zm00001d051001_P002 | Maize | cytosol | 91.99 | 91.99 |
HORVU6Hr1G054520.3 | Barley | cytosol, mitochondrion | 99.11 | 91.76 |
EES05377 | Sorghum | cytosol | 91.69 | 91.69 |
KXG21112 | Sorghum | cytosol | 89.91 | 89.91 |
VIT_01s0010g02460.t01 | Wine grape | cytosol | 89.32 | 88.53 |
PGSC0003DMT400039449 | Potato | extracellular | 87.54 | 87.54 |
Solyc03g111010.2.1 | Tomato | plastid | 87.54 | 87.54 |
KRG97466 | Soybean | endoplasmic reticulum, nucleus | 88.13 | 87.35 |
KRH31426 | Soybean | endoplasmic reticulum | 87.83 | 87.06 |
Solyc06g071920.2.1 | Tomato | nucleus | 86.94 | 86.94 |
CDY49358 | Canola | cytosol, mitochondrion | 86.65 | 86.9 |
Bra040213.1-P | Field mustard | cytosol | 86.94 | 86.69 |
GSMUA_Achr11P... | Banana | cytosol | 88.72 | 86.67 |
Bra016729.1-P | Field mustard | cytosol | 86.94 | 86.43 |
AT3G04120.1 | Thale cress | cytosol | 86.65 | 86.39 |
Bra040146.1-P | Field mustard | cytosol | 86.65 | 86.39 |
VIT_17s0000g10430.t01 | Wine grape | extracellular | 86.35 | 86.35 |
PGSC0003DMT400069357 | Potato | cytosol | 86.35 | 86.35 |
AT1G13440.1 | Thale cress | cytosol | 86.35 | 86.09 |
Bra026904.1-P | Field mustard | cytosol | 86.35 | 86.09 |
TraesCS7D01G309500.1 | Wheat | cytosol | 86.05 | 86.05 |
PGSC0003DMT400044944 | Potato | extracellular | 85.76 | 85.5 |
Bra019722.1-P | Field mustard | cytosol | 74.48 | 85.37 |
Solyc05g014470.2.1 | Tomato | extracellular, plastid | 85.46 | 85.21 |
CDX92059 | Canola | cytosol, endoplasmic reticulum, peroxisome | 86.94 | 84.2 |
KRH54234 | Soybean | endoplasmic reticulum, nucleus | 84.27 | 84.02 |
GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 89.32 | 83.84 |
KRH63724 | Soybean | nucleus | 83.98 | 83.73 |
KRH63725 | Soybean | endoplasmic reticulum, nucleus | 83.98 | 83.73 |
KRH54227 | Soybean | endoplasmic reticulum, nucleus | 83.68 | 83.43 |
CDY42906 | Canola | cytosol | 87.24 | 83.29 |
CDX74199 | Canola | endoplasmic reticulum | 86.35 | 82.67 |
CDX98100 | Canola | cytosol, mitochondrion, peroxisome | 74.48 | 78.93 |
CDY50169 | Canola | cytosol | 86.94 | 78.76 |
CDY21098 | Canola | cytosol | 86.94 | 78.55 |
GSMUA_Achr11P... | Banana | plasma membrane | 89.61 | 75.12 |
CDY26651 | Canola | mitochondrion, peroxisome | 74.18 | 75.08 |
CDY30032 | Canola | cytosol | 86.94 | 74.55 |
CDY21135 | Canola | cytosol, mitochondrion, peroxisome, plastid | 74.78 | 73.9 |
PGSC0003DMT400044945 | Potato | cytosol | 38.28 | 72.88 |
CDY16090 | Canola | cytoskeleton, cytosol, peroxisome | 86.05 | 67.44 |
CDY29987 | Canola | cytosol, peroxisome, plastid | 74.48 | 66.76 |
Zm00001d017121_P001 | Maize | plastid | 91.69 | 60.59 |
TraesCS6D01G146900.1 | Wheat | plastid | 70.03 | 56.73 |
TraesCS7D01G465500.1 | Wheat | plastid | 70.62 | 55.09 |
KRH37937 | Soybean | plastid | 13.06 | 50.0 |
TraesCS2D01G322900.1 | Wheat | plastid | 46.88 | 39.4 |
TraesCS4D01G319400.1 | Wheat | plastid | 48.37 | 36.71 |
TraesCS3D01G063600.1 | Wheat | plastid | 37.09 | 21.48 |
Protein Annotations
KEGG:00010+1.2.1.12 | KEGG:00710+1.2.1.12 | MapMan:2.1.1.4.1 | Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | GO:GO:0000166 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0006006 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0016620 | GO:GO:0050661 | GO:GO:0051287 | GO:GO:0055114 | InterPro:GlycerAld/Erythrose_P_DH |
InterPro:GlycerAld_3-P_DH_AS | InterPro:GlycerAld_3-P_DH_NAD(P)-bd | InterPro:GlycerAld_3-P_DH_cat | InterPro:Glyceraldehyde-3-P_DH_1 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00044 |
PFAM:PF02800 | PIRSF:PIRSF000149 | PRINTS:PR00078 | ScanProsite:PS00071 | PANTHER:PTHR10836 | PANTHER:PTHR10836:SF63 |
SMART:SM00846 | SUPFAM:SSF51735 | SUPFAM:SSF55347 | TIGRFAMs:TIGR01534 | EnsemblPlantsGene:TraesCS6D01G196300 | EnsemblPlants:TraesCS6D01G196300.2 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:272639969..272642501
Molecular Weight (calculated)
36610.8 Da
IEP (calculated)
7.180
GRAVY (calculated)
-0.121
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPIKIGING FGRIGRLVAR VALQSPDVEL VAVNDPFITT DYMTYMFKYD TVHGQWKHHE VKVKDSKTLL FGEKEVAVFG CRNPEEIPWA AAGAEYVVES
101: TGVFTDKDKA AAHIKGGAKK VIISAPSKDA PMFVCGVNEK EYKSDIDIVS NASCTTNCLA PLAKVINDRF GIVEGLMTTV HAMTATQKTV DGPSSKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPELNGKL TGMAFRVPTV DVSVVDLTVR LAKPATYDQI KAAIKEESEG NLKGILGYVD EDLVSTDFQG DNRSSIFDAK
301: AGIALNDNFV KLVSWYDNEW GYSTRVVDLI RHMHSTK
101: TGVFTDKDKA AAHIKGGAKK VIISAPSKDA PMFVCGVNEK EYKSDIDIVS NASCTTNCLA PLAKVINDRF GIVEGLMTTV HAMTATQKTV DGPSSKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPELNGKL TGMAFRVPTV DVSVVDLTVR LAKPATYDQI KAAIKEESEG NLKGILGYVD EDLVSTDFQG DNRSSIFDAK
301: AGIALNDNFV KLVSWYDNEW GYSTRVVDLI RHMHSTK
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.