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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, nucleus

Predictor Summary:
  • plastid 1
  • mitochondrion 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi, nucleus
Any Predictor:cytosol, mitochondrion
iPSORT:plastid
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
extracellular: 19786127
plastid: 22160430
golgi: 23128297
golgi: 25769308
nucleus: 26228564
nucleus: 26579155
plasma membrane: 26897580
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 26228564 doi
E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
msms PMID: 19786127 doi
FJ Kong, A Oyanagi, S Komatsu
National Institute of Crop Science, Tsukuba 305-8518, Japan.
msms PMID: 26579155 doi
T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
msms PMID: 26897580 doi
Y Shen, J Du, L Yue, X Zhan
College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu Province, 210095, People's Republic of China., College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu Province, 210095, People's Republic of China. xhzhan@njau.edu.cn.
msms, gfp PMID: 23128297 doi
M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G391100.1 cytosol, cytosol, mitochondrion
TraesCS3A01G391500.1 cytosol, cytosol, mitochondrion
TraesCS3B01G422900.1 cytosol, cytosol, mitochondrion
TraesCS3B01G423200.1 cytosol, cytosol, mitochondrion
TraesCS3D01G383700.1 cytosol, cytosol, mitochondrion
TraesCS3D01G384000.1 cytosol, cytosol, mitochondrion
TraesCS3D01G384100.2 cytosol, cytosol, mitochondrion
TraesCS5A01G009400.1 cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13440.1 TraesCS3A01G391100.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3A01G391500.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3B01G422900.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3B01G423200.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3D01G383700.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3D01G384000.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3D01G384100.2 AT2G36460.1 23316205
AT1G13440.1 TraesCS5A01G009400.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3A01G391100.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3A01G391500.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3B01G422900.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3B01G423200.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3D01G383700.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3D01G384000.1 AT2G36460.1 23316205
AT1G13440.1 TraesCS3D01G384100.2 AT2G36460.1 23316205
AT1G13440.1 TraesCS5A01G009400.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3A01G391100.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3A01G391500.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3B01G422900.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3B01G423200.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3D01G383700.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3D01G384000.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3D01G384100.2 AT2G36460.1 23316205
AT3G04120.1 TraesCS5A01G009400.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3A01G391100.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3A01G391500.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3B01G422900.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3B01G423200.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3D01G383700.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3D01G384000.1 AT2G36460.1 23316205
AT3G04120.1 TraesCS3D01G384100.2 AT2G36460.1 23316205
AT3G04120.1 TraesCS5A01G009400.1 AT2G36460.1 23316205
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G213700.1 Wheat unclear 99.41 99.41
TraesCS6B01G243700.1 Wheat endoplasmic reticulum 100.0 94.13
Os02t0601300-01 Rice plasma membrane 92.88 92.88
Zm00001d051001_P002 Maize cytosol 91.99 91.99
HORVU6Hr1G054520.3 Barley cytosol, mitochondrion 99.11 91.76
EES05377 Sorghum cytosol 91.69 91.69
KXG21112 Sorghum cytosol 89.91 89.91
VIT_01s0010g02460.t01 Wine grape cytosol 89.32 88.53
PGSC0003DMT400039449 Potato extracellular 87.54 87.54
Solyc03g111010.2.1 Tomato plastid 87.54 87.54
KRG97466 Soybean endoplasmic reticulum, nucleus 88.13 87.35
KRH31426 Soybean endoplasmic reticulum 87.83 87.06
Solyc06g071920.2.1 Tomato nucleus 86.94 86.94
CDY49358 Canola cytosol, mitochondrion 86.65 86.9
Bra040213.1-P Field mustard cytosol 86.94 86.69
GSMUA_Achr11P... Banana cytosol 88.72 86.67
Bra016729.1-P Field mustard cytosol 86.94 86.43
AT3G04120.1 Thale cress cytosol 86.65 86.39
Bra040146.1-P Field mustard cytosol 86.65 86.39
VIT_17s0000g10430.t01 Wine grape extracellular 86.35 86.35
PGSC0003DMT400069357 Potato cytosol 86.35 86.35
AT1G13440.1 Thale cress cytosol 86.35 86.09
Bra026904.1-P Field mustard cytosol 86.35 86.09
TraesCS7D01G309500.1 Wheat cytosol 86.05 86.05
PGSC0003DMT400044944 Potato extracellular 85.76 85.5
Bra019722.1-P Field mustard cytosol 74.48 85.37
Solyc05g014470.2.1 Tomato extracellular, plastid 85.46 85.21
CDX92059 Canola cytosol, endoplasmic reticulum, peroxisome 86.94 84.2
KRH54234 Soybean endoplasmic reticulum, nucleus 84.27 84.02
GSMUA_AchrUn_... Banana endoplasmic reticulum 89.32 83.84
KRH63724 Soybean nucleus 83.98 83.73
KRH63725 Soybean endoplasmic reticulum, nucleus 83.98 83.73
KRH54227 Soybean endoplasmic reticulum, nucleus 83.68 83.43
CDY42906 Canola cytosol 87.24 83.29
CDX74199 Canola endoplasmic reticulum 86.35 82.67
CDX98100 Canola cytosol, mitochondrion, peroxisome 74.48 78.93
CDY50169 Canola cytosol 86.94 78.76
CDY21098 Canola cytosol 86.94 78.55
GSMUA_Achr11P... Banana plasma membrane 89.61 75.12
CDY26651 Canola mitochondrion, peroxisome 74.18 75.08
CDY30032 Canola cytosol 86.94 74.55
CDY21135 Canola cytosol, mitochondrion, peroxisome, plastid 74.78 73.9
PGSC0003DMT400044945 Potato cytosol 38.28 72.88
CDY16090 Canola cytoskeleton, cytosol, peroxisome 86.05 67.44
CDY29987 Canola cytosol, peroxisome, plastid 74.48 66.76
Zm00001d017121_P001 Maize plastid 91.69 60.59
TraesCS6D01G146900.1 Wheat plastid 70.03 56.73
TraesCS7D01G465500.1 Wheat plastid 70.62 55.09
KRH37937 Soybean plastid 13.06 50.0
TraesCS2D01G322900.1 Wheat plastid 46.88 39.4
TraesCS4D01G319400.1 Wheat plastid 48.37 36.71
TraesCS3D01G063600.1 Wheat plastid 37.09 21.48
Protein Annotations
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12MapMan:2.1.1.4.1Gene3D:3.30.360.10Gene3D:3.40.50.720GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0006006GO:GO:0008150
GO:GO:0008152GO:GO:0016620GO:GO:0050661GO:GO:0051287GO:GO:0055114InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_ASInterPro:GlycerAld_3-P_DH_NAD(P)-bdInterPro:GlycerAld_3-P_DH_catInterPro:Glyceraldehyde-3-P_DH_1InterPro:NAD(P)-bd_dom_sfPFAM:PF00044
PFAM:PF02800PIRSF:PIRSF000149PRINTS:PR00078ScanProsite:PS00071PANTHER:PTHR10836PANTHER:PTHR10836:SF63
SMART:SM00846SUPFAM:SSF51735SUPFAM:SSF55347TIGRFAMs:TIGR01534EnsemblPlantsGene:TraesCS6D01G196300EnsemblPlants:TraesCS6D01G196300.2
SEG:seg:::::
Description
No Description!
Coordinates
chr6D:+:272639969..272642501
Molecular Weight (calculated)
36610.8 Da
IEP (calculated)
7.180
GRAVY (calculated)
-0.121
Length
337 amino acids
Sequence
(BLAST)
001: MAPIKIGING FGRIGRLVAR VALQSPDVEL VAVNDPFITT DYMTYMFKYD TVHGQWKHHE VKVKDSKTLL FGEKEVAVFG CRNPEEIPWA AAGAEYVVES
101: TGVFTDKDKA AAHIKGGAKK VIISAPSKDA PMFVCGVNEK EYKSDIDIVS NASCTTNCLA PLAKVINDRF GIVEGLMTTV HAMTATQKTV DGPSSKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPELNGKL TGMAFRVPTV DVSVVDLTVR LAKPATYDQI KAAIKEESEG NLKGILGYVD EDLVSTDFQG DNRSSIFDAK
301: AGIALNDNFV KLVSWYDNEW GYSTRVVDLI RHMHSTK
Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.