Factsheet for Zm00001d017121_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 16281185
plastid: 22065420
plastid: 23198870
plasma membrane: 23353019

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 16281185 doi

S Chivasa, WJ Simon, XL Yu, N Yalpani, AR Slabas

School of Biological and Biomedical Sciences, University of Durham, South Road, Durham DH1 3LE, UK.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012103_P001	cytosol, cytosol, mitochondrion
Zm00001d042453_P001	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	Zm00001d012103_P001	AT2G36460.1	23316205
AT1G13440.1	Zm00001d042453_P001	AT2G36460.1	23316205
AT1G13440.1	Zm00001d012103_P001	AT2G36460.1	23316205
AT1G13440.1	Zm00001d042453_P001	AT2G36460.1	23316205
AT3G04120.1	Zm00001d012103_P001	AT2G36460.1	23316205
AT3G04120.1	Zm00001d042453_P001	AT2G36460.1	23316205
AT3G04120.1	Zm00001d012103_P001	AT2G36460.1	23316205
AT3G04120.1	Zm00001d042453_P001	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051001_P002	Maize	cytosol	65.88	99.7
EES05377	Sorghum	cytosol	64.71	97.92
Os02t0601300-01	Rice	plasma membrane	60.78	91.99
TraesCS6D01G196300.2	Wheat	golgi, nucleus	60.59	91.69
TraesCS6A01G213700.1	Wheat	unclear	60.2	91.1
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	62.35	88.83
VIT_01s0010g02460.t01	Wine grape	cytosol	58.82	88.24
PGSC0003DMT400039449	Potato	extracellular	57.84	87.54
CDY49358	Canola	cytosol, mitochondrion	57.65	87.5
Bra040213.1-P	Field mustard	cytosol	57.84	87.28
Solyc03g111010.2.1	Tomato	plastid	57.65	87.24
Solyc06g071920.2.1	Tomato	nucleus	57.65	87.24
GSMUA_Achr11P...	Banana	cytosol	58.82	86.96
Zm00001d049641_P001	Maize	plasma membrane, plastid	57.45	86.94
KRG97466	Soybean	endoplasmic reticulum, nucleus	57.84	86.76
KRH31426	Soybean	endoplasmic reticulum	57.84	86.76
Bra016729.1-P	Field mustard	cytosol	57.65	86.73
Bra040146.1-P	Field mustard	cytosol	57.45	86.69
PGSC0003DMT400069357	Potato	cytosol	57.25	86.65
Bra026904.1-P	Field mustard	cytosol	57.06	86.09
AT1G13440.1	Thale cress	cytosol	57.06	86.09
AT3G04120.1	Thale cress	cytosol	56.86	85.8
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	60.39	85.79
VIT_17s0000g10430.t01	Wine grape	extracellular	56.67	85.76
PGSC0003DMT400044944	Potato	extracellular	56.67	85.5
Bra019722.1-P	Field mustard	cytosol	49.22	85.37
Solyc05g014470.2.1	Tomato	extracellular, plastid	56.47	85.21
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	60.39	84.62
Zm00001d035156_P003	Maize	cytosol	57.84	84.53
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	57.65	84.48
KRH63724	Soybean	nucleus	55.69	84.02
TraesCS7B01G234400.1	Wheat	cytosol	56.47	83.97
KRH63725	Soybean	endoplasmic reticulum, nucleus	55.49	83.73
KRH54227	Soybean	endoplasmic reticulum, nucleus	55.49	83.73
KRH54234	Soybean	endoplasmic reticulum, nucleus	55.49	83.73
CDY42906	Canola	cytosol	57.84	83.57
CDX74199	Canola	endoplasmic reticulum	57.45	83.24
CDX98100	Canola	cytosol, mitochondrion, peroxisome	50.0	80.19
CDY50169	Canola	cytosol	57.84	79.3
CDY21098	Canola	cytosol	57.84	79.09
GSMUA_Achr11P...	Banana	plasma membrane	61.57	78.11
CDY26651	Canola	mitochondrion, peroxisome	50.0	76.58
CDY30032	Canola	cytosol	58.43	75.83
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	50.0	74.78
PGSC0003DMT400044945	Potato	cytosol	25.69	74.01
CDY29987	Canola	cytosol, peroxisome, plastid	50.98	69.15
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	58.04	68.84
Zm00001d015383_P001	Maize	plastid	48.24	58.71
Zm00001d053798_P004	Maize	plastid	46.67	57.35
KRH37937	Soybean	plastid	8.24	47.73
Zm00001d003429_P001	Maize	plastid	30.98	39.21
Zm00001d025607_P001	Maize	cytosol, plastid	28.24	38.71
Zm00001d025593_P001	Maize	plastid	28.63	36.23
Zm00001d025599_P001	Maize	plastid	28.43	35.98
Zm00001d027488_P001	Maize	extracellular, plastid	31.37	35.63
Zm00001d025601_P001	Maize	plastid	11.37	33.92
Zm00001d019945_P001	Maize	plastid	7.25	33.33
Zm00001d021798_P001	Maize	cytosol	15.88	31.15
Zm00001d015885_P001	Maize	mitochondrion	9.22	30.92
Zm00001d016297_P001	Maize	cytosol	7.25	27.01

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	UniProt:A0A1D6HCF4
ProteinID:AQK72381.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004365	GO:GO:0005488
GO:GO:0005575	GO:GO:0005975	GO:GO:0006006	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0016491	GO:GO:0016620	GO:GO:0032991	GO:GO:0034059	GO:GO:0042301
GO:GO:0043234	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	GO:GO:0070403	InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044
PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000843E6E5	EnsemblPlantsGene:Zm00001d017121	EnsemblPlants:Zm00001d017121_P001
EnsemblPlants:Zm00001d017121_T001	SEG:seg	:	:	:	:

Description

glyceraldehyde-3-phosphate dehydrogenase4 glyceraldehyde-3-phosphate dehydrogenase4

Coordinates

chr5:+:186104976..186109690

Molecular Weight (calculated)

55734.5 Da

IEP (calculated)

9.992

GRAVY (calculated)

-0.335

Length

510 amino acids

Sequence
(BLAST)

001: MKSDTHPPSM STEFFNIQRP PKTSSTDGIF FLCKKGKEGQ TRHRITGLLS HFRWARNQQR SRVSKVQRSD QWEASRNHRP PRSRFSSGPH LSPARPHVSA
101: PPFLPKPGSA TSGGPSQQQP QPQPQSQPQP PVPSPFYIWP LRSIGRITLA NPVIDLVSNP SILVSSVPQH LNPMAKIKIG INGFGRIGRL VARVALQSDD
201: VELVAVNDPF ISTDYMTYMF KYDTVHGQWK HHEVKVKDSK TLLFGEKEVA VFGCRNPEEI PWGSVGAEYV VESTGVFTDQ EKAAAHLKGG AKKVVISAPS
301: KDAPMFVVGV NEKEYKSDIN IVSNASCTTN CLAPLAKVIN DKFGIVEGLM TTVHAITATQ KTVDGPSSKD WRGGRAASFN IIPSSTGAAK AVGKVLPVLN
401: GKLTGMSFRV PTVDVSVVDL TVRLEKSATY DEIKAAVKAE AEGSLKGILG YVEEDLVSTD FQGDSRSSIF DAKAGIALNG NFVKLVSWYD NEWGYSTRVV
501: DLIRHMNSTN

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.