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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular

Predictor Summary:
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 extracellular: 22192489
msms PMID: 22192489 doi
K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling
Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d027488_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G42970.1 Zm00001d027488_P001 AT1G42970.1 21798944
AT1G42970.1 Zm00001d004494_P001 AT2G42580.1 19000166
AT1G42970.1 Zm00001d006366_P001 AT2G42580.1 19000166
AT1G42970.1 Zm00001d008930_P003 AT2G42580.1 19000166
AT1G42970.1 Zm00001d009724_P009 AT2G42580.1 19000166
AT1G42970.1 Zm00001d011352_P001 AT2G42580.1 19000166
AT1G42970.1 Zm00001d033961_P001 AT2G42580.1 19000166
AT1G42970.1 Zm00001d039362_P002 AT2G42580.1 19000166
AT1G42970.1 Zm00001d044479_P001 AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG40264 Sorghum plastid 95.32 96.4
Os03t0129300-01 Rice extracellular, plastid 92.2 93.24
HORVU4Hr1G082700.4 Barley plastid 89.09 90.09
TraesCS5A01G495100.1 Wheat golgi, plastid 88.86 89.86
TraesCS4D01G319400.1 Wheat plastid 88.64 89.64
TraesCS4B01G323000.1 Wheat plastid 88.64 89.64
GSMUA_Achr11P... Banana mitochondrion 74.83 85.5
CDY69523 Canola cytosol 76.39 85.32
VIT_18s0122g00960.t01 Wine grape plastid 83.74 83.0
Bra034927.1-P Field mustard plastid 81.51 81.7
CDY35800 Canola plastid 81.51 81.7
Solyc12g094640.1.1 Tomato plastid 81.29 81.11
KRH60895 Soybean nucleus, plastid 81.29 80.93
PGSC0003DMT400075608 Potato cytosol, extracellular, plastid 81.07 80.89
KRH51576 Soybean nucleus, plastid 81.51 80.79
PGSC0003DMT400025881 Potato plastid 80.85 80.67
AT1G42970.1 Thale cress plastid 80.18 80.54
GSMUA_Achr11P... Banana plastid 80.62 80.09
Solyc04g082630.2.1 Tomato plastid 80.85 76.26
Zm00001d003429_P001 Maize plastid 64.59 71.96
Zm00001d025607_P001 Maize cytosol, plastid 58.13 70.16
KRH74912 Soybean cytosol 21.83 70.0
Zm00001d025599_P001 Maize plastid 60.58 67.49
Zm00001d025593_P001 Maize plastid 59.91 66.75
Zm00001d025601_P001 Maize plastid 19.15 50.29
Zm00001d049641_P001 Maize plasma membrane, plastid 36.08 48.07
Zm00001d051001_P002 Maize cytosol 35.63 47.48
Zm00001d035156_P003 Maize cytosol 35.41 45.56
Zm00001d015383_P001 Maize plastid 40.53 43.44
Zm00001d053798_P004 Maize plastid 37.64 40.72
Zm00001d017121_P001 Maize plastid 35.63 31.37
Zm00001d015885_P001 Maize mitochondrion 10.24 30.26
Zm00001d019945_P001 Maize plastid 6.24 25.23
Zm00001d016297_P001 Maize cytosol 6.46 21.17
Zm00001d021798_P001 Maize cytosol 12.03 20.77
Protein Annotations
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12MapMan:1.2.3Gene3D:3.30.360.10Gene3D:3.40.50.720EntrezGene:542290
UniProt:B4F8L7EMBL:BT033455EMBL:BT042733EMBL:BT086524InterPro:DUF_CP12EMBL:EU956029
EMBL:EU956929GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575
GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0006006
GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009409GO:GO:0009416GO:GO:0009507
GO:GO:0009535GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009628GO:GO:0009744
GO:GO:0009941GO:GO:0010319GO:GO:0016020GO:GO:0016491GO:GO:0016620GO:GO:0046686
GO:GO:0048046GO:GO:0050661GO:GO:0051287GO:GO:0055114InterPro:GlycerAld/Erythrose_P_DHInterPro:GlycerAld_3-P_DH_AS
InterPro:GlycerAld_3-P_DH_NAD(P)-bdInterPro:GlycerAld_3-P_DH_catInterPro:Glyceraldehyde-3-P_DH_1InterPro:NAD(P)-bd_dom_sfProteinID:ONL93275.1PFAM:PF00044
PFAM:PF02672PFAM:PF02800PRINTS:PR00078ScanProsite:PS00071PANTHER:PTHR43148PANTHER:PTHR43148:SF1
SMART:SM00846SUPFAM:SSF51735SUPFAM:SSF55347TIGRFAMs:TIGR01534UniParc:UPI00017B6376EnsemblPlantsGene:Zm00001d027488
EnsemblPlants:Zm00001d027488_P001EnsemblPlants:Zm00001d027488_T001SEG:seg:::
Description
glyceraldehyde phosphate dehydrogenase B1 glyceraldehyde phosphate dehydrogenase B1
Coordinates
chr1:+:6407153..6409815
Molecular Weight (calculated)
47182.3 Da
IEP (calculated)
6.350
GRAVY (calculated)
0.054
Length
449 amino acids
Sequence
(BLAST)
001: MATHAALAAS RIPAGARLHS RAPASSRHGV QRLDFADFSG LRPGSCSVSA AAREASFSDV LGAQLVAKAT GENAVRAPAE AKLKVAINGF GRIGRNFLRC
101: WHGREDSPID VVVVNDSGGV RNASHLLKYD SMLGTFKADV KIVDDTTISV DGKPITVVSS RDPLKLPWGE LGIDIVIEGT GVFVDGPGAG KHIQAGAKKV
201: IITAPAKGAD IPTYVVGVNE GDYDHSVADI ISNASCTTNC LAPFVKILDE EFGIVKGTMT TTHSYTGDQR LLDASHRDLR RARAAALNIV PTSTGAAKAV
301: ALVLPQLKGK LNGIALRVPT PNVSVVDLVI NTVKTGITAD DVNAAFRKAA AGPLQGILEV CDVPLVSVDF RCSDVSCTID ASLSMVMGDD MVKVVAWYDN
401: EWGYSQRVVD LAHLVAAKWP GAAAAGSGDP LEDFCKDNPE TDECKVYEA
Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)
001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD
Arabidopsis Description
GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.