CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY35800
CDY42827
CDY51514
CDY55390
CDY61202
CDY69523

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	CDY35800	AT1G42970.1	21798944
AT1G42970.1	CDY69523	AT1G42970.1	21798944
AT1G42970.1	CDY42827	AT2G42580.1	19000166
AT1G42970.1	CDY51514	AT2G42580.1	19000166
AT1G42970.1	CDY55390	AT2G42580.1	19000166
AT1G42970.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034927.1-P	Field mustard	plastid	100.0	100.0
CDY69523	Canola	cytosol	89.29	99.5
AT1G42970.1	Thale cress	plastid	94.42	94.63
GSMUA_Achr11P...	Banana	mitochondrion	77.9	88.8
Solyc12g094640.1.1	Tomato	plastid	87.28	86.89
KRH60895	Soybean	nucleus, plastid	87.28	86.7
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	86.83	86.44
KRH51576	Soybean	nucleus, plastid	87.28	86.31
PGSC0003DMT400025881	Potato	plastid	86.61	86.22
VIT_18s0122g00960.t01	Wine grape	plastid	87.05	86.09
GSMUA_Achr11P...	Banana	plastid	84.6	83.85
KXG40264	Sorghum	plastid	81.92	82.66
TraesCS4B01G323000.1	Wheat	plastid	81.7	82.43
Os03t0129300-01	Rice	extracellular, plastid	81.7	82.43
HORVU4Hr1G082700.4	Barley	plastid	81.7	82.43
TraesCS4D01G319400.1	Wheat	plastid	81.47	82.21
TraesCS5A01G495100.1	Wheat	golgi, plastid	81.25	81.98
Zm00001d027488_P001	Maize	extracellular, plastid	81.7	81.51
Solyc04g082630.2.1	Tomato	plastid	86.61	81.51
CDY26599	Canola	plastid	65.18	73.18
CDY28536	Canola	plastid	62.05	73.16
CDX98028	Canola	plastid	64.96	72.93
CDY16038	Canola	plastid	64.96	72.93
CDY19412	Canola	plastid	64.96	72.93
CDX83635	Canola	plastid	61.83	72.89
CDY13649	Canola	plastid	61.83	72.89
CDY48981	Canola	plastid	58.93	71.74
KRH74912	Soybean	cytosol	22.1	70.71
CDY49358	Canola	cytosol, mitochondrion	35.71	47.62
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	36.16	46.55
CDY42906	Canola	cytosol	36.16	45.89
CDX74199	Canola	endoplasmic reticulum	35.94	45.74
CDX79324	Canola	plastid	42.86	45.61
CDX67990	Canola	plastid	42.63	45.37
CDY22281	Canola	plastid	42.19	45.11
CDY25342	Canola	plastid	41.74	45.06
CDY50169	Canola	cytosol	36.83	44.35
CDY21098	Canola	cytosol	36.83	44.24
CDY35080	Canola	plastid	41.29	43.43
CDY33343	Canola	plastid	41.07	43.19
CDX98100	Canola	cytosol, mitochondrion, peroxisome	30.13	42.45
CDY30032	Canola	cytosol	36.83	41.98
CDY26651	Canola	mitochondrion, peroxisome	30.36	40.84
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	29.91	39.3
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	36.61	38.14
CDY29987	Canola	cytosol, peroxisome, plastid	29.69	35.37

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078HBL5
UniProt:A0A078HBL5	EnsemblPlants:CDY35800	ProteinID:CDY35800	ProteinID:CDY35800.1	InterPro:DUF_CP12	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00059297001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02672	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR43148	PANTHER:PTHR43148:SF1	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniPathway:UPA00109	UniParc:UPI000254725D
SEG:seg	:	:	:	:	:

Description

BnaA08g04610DGlyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078HBL5]

Coordinates

chrLK032361:+:315213..317977

Molecular Weight (calculated)

47554.9 Da

IEP (calculated)

7.211

GRAVY (calculated)

0.001

Length

448 amino acids

Sequence
(BLAST)

001: MATHSALAVS RIPVKPRLQS KSAIHSFPAQ CSSKRLEVAA FSGLRVSSNG GEASFFDAIA AQITPKAVGT SSPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKADVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVVGVNEQ DYSHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAA GPLKGVLEVC DTPLVSCDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVAAKWPG EVAAGSGDPL EDFCKTNPAD EECKVYEA

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.