CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY35800
CDY42827
CDY51514
CDY55390
CDY61202
CDY69523

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	CDY35800	AT1G42970.1	21798944
AT1G42970.1	CDY69523	AT1G42970.1	21798944
AT1G42970.1	CDY42827	AT2G42580.1	19000166
AT1G42970.1	CDY51514	AT2G42580.1	19000166
AT1G42970.1	CDY55390	AT2G42580.1	19000166
AT1G42970.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034927.1-P	Field mustard	plastid	99.5	89.29
CDY35800	Canola	plastid	99.5	89.29
GSMUA_Achr11P...	Banana	mitochondrion	85.82	87.79
AT1G42970.1	Thale cress	plastid	94.53	85.01
Solyc12g094640.1.1	Tomato	plastid	89.55	80.0
KRH60895	Soybean	nucleus, plastid	89.55	79.82
VIT_18s0122g00960.t01	Wine grape	plastid	89.8	79.69
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	89.05	79.56
KRH51576	Soybean	nucleus, plastid	89.55	79.47
PGSC0003DMT400025881	Potato	plastid	88.81	79.33
GSMUA_Achr11P...	Banana	plastid	87.31	77.65
TraesCS4B01G323000.1	Wheat	plastid	85.57	77.48
KXG40264	Sorghum	plastid	85.57	77.48
HORVU4Hr1G082700.4	Barley	plastid	85.57	77.48
TraesCS4D01G319400.1	Wheat	plastid	85.32	77.25
TraesCS5A01G495100.1	Wheat	golgi, plastid	85.07	77.03
Os03t0129300-01	Rice	extracellular, plastid	85.07	77.03
Zm00001d027488_P001	Maize	extracellular, plastid	85.32	76.39
Solyc04g082630.2.1	Tomato	plastid	88.81	75.0
CDY26599	Canola	plastid	69.9	70.43
CDY28536	Canola	plastid	66.42	70.26
CDY16038	Canola	plastid	69.65	70.18
CDY19412	Canola	plastid	69.65	70.18
CDX98028	Canola	plastid	69.65	70.18
CDX83635	Canola	plastid	66.17	70.0
CDY13649	Canola	plastid	66.17	70.0
KRH74912	Soybean	cytosol	24.38	70.0
CDY48981	Canola	plastid	62.94	68.75
CDY49358	Canola	cytosol, mitochondrion	39.55	47.32
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	39.8	45.98
CDY42906	Canola	cytosol	39.8	45.33
CDX74199	Canola	endoplasmic reticulum	39.55	45.17
CDY25342	Canola	plastid	45.02	43.61
CDY50169	Canola	cytosol	40.3	43.55
CDX79324	Canola	plastid	45.52	43.47
CDY21098	Canola	cytosol	40.3	43.43
CDX67990	Canola	plastid	45.27	43.23
CDY22281	Canola	plastid	45.02	43.2
CDY33343	Canola	plastid	44.28	41.78
CDY35080	Canola	plastid	44.03	41.55
CDX98100	Canola	cytosol, mitochondrion, peroxisome	32.84	41.51
CDY30032	Canola	cytosol	40.3	41.22
CDY26651	Canola	mitochondrion, peroxisome	33.08	39.94
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	32.59	38.42
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	40.05	37.44
CDY29987	Canola	cytosol, peroxisome, plastid	32.59	34.84

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078JPL9
UniProt:A0A078JPL9	EnsemblPlants:CDY69523	ProteinID:CDY69523	ProteinID:CDY69523.1	InterPro:DUF_CP12	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00088488001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02672	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078
ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF1	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901
MetaCyc:PWY-7003	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniPathway:UPA00109
UniParc:UPI0004EE8FB3	SEG:seg	:	:	:	:

Description

BnaC08g46180DGlyceraldehyde-3-phosphate dehydrogenase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JPL9]

Coordinates

chrLK039612:+:75..2557

Molecular Weight (calculated)

42633.9 Da

IEP (calculated)

5.690

GRAVY (calculated)

-0.012

Length

402 amino acids

Sequence
(BLAST)

001: SSNGGEASFF DAIAAQITPK AVGTPSPVRG ETVAKLKVAI NGFGRIGRNF LRCWHGRKDS PLEVVVLNDS GGVKNASHLL KYDSMLGTFK ADVKIVDNET
101: ISVDGKLIKV VSNRDPLKLP WADLGIDIVI EGTGVFVDGP GAGKHIQAGA SKVIITAPAK GADIPTYVVG VNEQDYSHDV ANIISNASCT TNCLAPFAKV
201: LDEEFGIVKG TMTTTHSYTG DQRLLDASHR DLRRARAAAL NIVPTSTGAA KAVSLVLPQL KGKLNGIALR VPTPNVSVVD LVINVEKKGL TAEDVNEAFR
301: KAAAGPLKGV LEVCDTPLVS CDFRCSDVST TIDSSLTMVM GDDMVKVVAW YDNEWGYSQR VVDLAHLVAA KWPGEVAAGS GDPLEDFCKT NPADEECKVY
401: EA

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.