CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19412	Canola	plastid	100.0	100.0
Bra019797.1-P	Field mustard	plastid	99.75	99.75
CDY26599	Canola	plastid	98.75	98.75
CDY16038	Canola	plastid	98.75	98.75
CDY13649	Canola	plastid	88.47	92.89
CDY28536	Canola	plastid	87.72	92.11
CDX83635	Canola	plastid	87.72	92.11
CDY48981	Canola	plastid	83.46	90.49
AT1G12900.5	Thale cress	endoplasmic reticulum	97.49	88.21
VIT_14s0068g00680.t01	Wine grape	plastid	88.97	87.87
KRG94751	Soybean	extracellular, nucleus	88.22	87.34
PGSC0003DMT400030050	Potato	cytosol	87.22	87.22
KRH06774	Soybean	nucleus	87.97	87.1
Solyc04g009030.2.1	Tomato	plastid	86.72	86.72
TraesCS2B01G342200.1	Wheat	plastid	86.72	86.28
TraesCS2D01G322900.1	Wheat	plastid	86.72	86.28
TraesCS2A01G344600.1	Wheat	golgi, plastid	86.47	86.03
Os04t0459500-02	Rice	plastid	85.96	85.32
Zm00001d003429_P001	Maize	plastid	85.71	84.86
HORVU0Hr1G004830.6	Barley	plastid	86.47	84.56
GSMUA_Achr10P...	Banana	plastid	65.41	83.12
Solyc02g020940.2.1	Tomato	plastid	84.71	82.64
KXG26468	Sorghum	plastid	84.96	81.1
Zm00001d025607_P001	Maize	cytosol, plastid	75.19	80.65
Zm00001d025599_P001	Maize	plastid	80.2	79.4
Zm00001d025593_P001	Maize	plastid	79.45	78.66
GSMUA_Achr6P16250_001	Banana	plastid	85.46	77.85
KRH70104	Soybean	plastid	52.13	75.36
CDY69523	Canola	cytosol	70.18	69.65
CDY35800	Canola	plastid	72.93	64.96
CDY49358	Canola	cytosol, mitochondrion	39.85	47.32
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	39.85	45.69
CDX74199	Canola	endoplasmic reticulum	40.1	45.45
CDY42906	Canola	cytosol	39.85	45.04
CDY25342	Canola	plastid	44.86	43.13
CDY50169	Canola	cytosol	40.1	43.01
CDY21098	Canola	cytosol	40.1	42.9
CDY22281	Canola	plastid	44.86	42.72
CDX98100	Canola	cytosol, mitochondrion, peroxisome	33.08	41.51
CDX79324	Canola	plastid	43.61	41.33
CDX67990	Canola	plastid	43.61	41.33
CDY35080	Canola	plastid	43.86	41.08
CDY33343	Canola	plastid	43.61	40.85
CDY30032	Canola	cytosol	40.1	40.71
CDY26651	Canola	mitochondrion, peroxisome	33.08	39.64
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	33.33	39.0
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	39.6	36.74
CDY29987	Canola	cytosol, peroxisome, plastid	33.08	35.11

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078EFC4
UniProt:A0A078EFC4	EnsemblPlants:CDX98028	ProteinID:CDX98028	ProteinID:CDX98028.1	ProteinID:CDY19412.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00105394001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniPathway:UPA00109	UniParc:UPI0004EEA381
SEG:seg	:	:	:	:	:

Description

BnaA06g07790DGlyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078EFC4]

Coordinates

chrLK031902:+:612805..614654

Molecular Weight (calculated)

42708.0 Da

IEP (calculated)

7.895

GRAVY (calculated)

-0.046

Length

399 amino acids

Sequence
(BLAST)

001: MASATFSVAK PSLQGFSDFS GLRNSSALPF GKKSSSDEFV SFVSFQTSAM GSNGGYRKGV TEAKLKVAIN GFGRIGRNFL RCWHGRKDSP LDVIAINDTG
101: GVKQATHLLK YDSTLGIFDA DVKPSGDSAL SVDGKIIKIV SDRNPSNLPW GELGIDLVIE GTGVFVDREG AGKHIQAGAK KVLITAPGKG DIPTYVVGVN
201: AELYSHEDTI ISNASCTTNC LAPFVKVLDQ KFGIIKGTMT TTHSYTGDQR LLDASHRDLR RARAAALNIV PTSTGAAKAV ALVLPNLKGK LNGIALRVPT
301: PNVSVVDLVV QVSKKTFAEE VNAAFRDAAE KELKGILDVC DEPLVSVDFR CSDVSSTIDS SLTMVMGDDM VKVIAWYDNE WGYSQRVVDL ADIVANNWK

Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)

001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.