Factsheet for Solyc04g009030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079470.2.1
Solyc06g009630.1.1
Solyc08g076220.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	Solyc08g076220.2.1	AT1G32060.1	17947231
AT3G26650.1	Solyc01g079470.2.1	AT3G62410.1	17947231
AT3G26650.1	Solyc06g009630.1.1	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030050	Potato	cytosol	98.5	98.5
Solyc02g020940.2.1	Tomato	plastid	90.48	88.26
CDY26599	Canola	plastid	86.72	86.72
CDY19412	Canola	plastid	86.72	86.72
CDX98028	Canola	plastid	86.72	86.72
Bra019797.1-P	Field mustard	plastid	86.47	86.47
CDY16038	Canola	plastid	86.47	86.47
Bra026948.1-P	Field mustard	plastid	86.22	86.22
AT3G26650.1	Thale cress	plastid	84.96	85.61
VIT_14s0068g00680.t01	Wine grape	plastid	86.22	85.15
Bra025219.1-P	Field mustard	plastid	80.7	84.74
CDY28536	Canola	plastid	80.45	84.47
CDY13649	Canola	plastid	80.2	84.21
CDX83635	Canola	plastid	79.95	83.95
Os04t0459500-02	Rice	plastid	83.96	83.33
Bra032939.1-P	Field mustard	plastid	69.67	83.23
Zm00001d003429_P001	Maize	plastid	83.96	83.13
CDY48981	Canola	plastid	76.44	82.88
TraesCS2D01G322900.1	Wheat	plastid	82.71	82.29
TraesCS2B01G342200.1	Wheat	plastid	82.71	82.29
TraesCS2A01G344600.1	Wheat	golgi, plastid	82.46	82.04
GSMUA_Achr10P...	Banana	plastid	63.66	80.89
HORVU0Hr1G004830.6	Barley	plastid	82.46	80.64
Zm00001d025607_P001	Maize	cytosol, plastid	73.93	79.3
KXG26468	Sorghum	plastid	82.96	79.19
Zm00001d025599_P001	Maize	plastid	78.2	77.42
AT1G12900.5	Thale cress	endoplasmic reticulum	85.21	77.1
GSMUA_Achr6P16250_001	Banana	plastid	84.21	76.71
Zm00001d025593_P001	Maize	plastid	77.44	76.67
KRH70104	Soybean	plastid	52.13	75.36
Solyc12g094640.1.1	Tomato	plastid	74.94	66.44
Solyc04g082630.2.1	Tomato	plastid	75.44	63.24
Solyc05g014480.2.1	Tomato	cytosol	4.76	50.0
Solyc03g111010.2.1	Tomato	plastid	39.1	46.29
Solyc06g071920.2.1	Tomato	nucleus	39.1	46.29
Solyc05g014470.2.1	Tomato	extracellular, plastid	38.85	45.86
Solyc05g005820.2.1	Tomato	plastid, unclear	38.35	45.4
Solyc01g098950.1.1	Tomato	cytosol	28.57	41.01
Solyc10g005510.2.1	Tomato	plastid	42.61	40.57
Solyc03g111000.2.1	Tomato	cytosol	14.54	33.33

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:K4BP59
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc04g009030.2
EnsemblPlants:Solyc04g009030.2.1	TIGRFAMs:TIGR01534	UniParc:UPI00027655C9	SEG:seg	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4BP59]

Coordinates

chr4:+:2597412..2600773

Molecular Weight (calculated)

42684.2 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.016

Length

399 amino acids

Sequence
(BLAST)

001: MAALSVANTS LKVNNKGFSE FSGLRTSSAV PFGRKTNDDL FSVAGLQTSA IGGRKNKRIV TEAKLKVAIN GFGRIGRNFL RCWHGRKDSP LDVIAINDTG
101: GVKQASHLLK YDSTLGIFDA DVKPVGTDGI SVDGKVIQVV SNRDPVNLPW GELGVDLVIE GTGVFVDREG AGKHIQAGAK KVLITAPGKG DIPTYVVGVN
201: AELYSHDEPI ISNASCTTNC LAPFVKVLDQ KFGIIKGTMT TTHSYTGDQR LLDASHRDLR RARAAALNIV PTSTGAAKAV ALVLPSLKGK LNGIALRVPT
301: PNVSVVDLVV QVTKKTFAEE VNAAFREAAD KELNGILSVC DEPLVSVDFR CSDVSSTVDS SLTMVMGDDM VKVIAWYDNE WGYSQRVVDL ADIVANQWK

Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)

001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.