Factsheet for GSMUA_Achr11P01450_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	GSMUA_Achr11P...	AT1G42970.1	21798944
AT1G42970.1	GSMUA_Achr11P...	AT1G42970.1	21798944
AT1G42970.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT1G42970.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT1G42970.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT1G42970.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT1G42970.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT1G42970.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	81.86	94.15
CDY69523	Canola	cytosol	77.65	87.31
VIT_18s0122g00960.t01	Wine grape	plastid	87.17	86.98
KRH60895	Soybean	nucleus, plastid	86.5	86.7
KRH51576	Soybean	nucleus, plastid	86.28	86.09
PGSC0003DMT400025881	Potato	plastid	85.62	86.0
Solyc12g094640.1.1	Tomato	plastid	85.4	85.78
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	85.18	85.56
AT1G42970.1	Thale cress	plastid	83.85	84.79
Bra034927.1-P	Field mustard	plastid	83.85	84.6
CDY35800	Canola	plastid	83.85	84.6
Os03t0129300-01	Rice	extracellular, plastid	81.19	82.66
KXG40264	Sorghum	plastid	80.97	82.43
Solyc04g082630.2.1	Tomato	plastid	85.84	81.51
TraesCS4D01G319400.1	Wheat	plastid	79.2	80.63
Zm00001d027488_P001	Maize	extracellular, plastid	80.09	80.62
HORVU4Hr1G082700.4	Barley	plastid	78.98	80.41
TraesCS5A01G495100.1	Wheat	golgi, plastid	78.98	80.41
TraesCS4B01G323000.1	Wheat	plastid	78.98	80.41
KRH74912	Soybean	cytosol	22.57	72.86
GSMUA_Achr10P...	Banana	plastid	47.57	68.47
GSMUA_Achr6P16250_001	Banana	plastid	63.05	65.07
GSMUA_Achr5P00240_001	Banana	cytosol	23.89	51.67
GSMUA_Achr11P...	Banana	cytosol	34.73	45.51
GSMUA_Achr9P02180_001	Banana	endoplasmic reticulum	36.5	45.08
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	34.73	43.73
GSMUA_Achr5P25410_001	Banana	unclear	36.28	41.62
GSMUA_Achr7P03580_001	Banana	plastid	38.94	41.03
GSMUA_Achr8P33500_001	Banana	plastid	38.94	41.03
GSMUA_Achr2P02610_001	Banana	cytosol	6.86	40.26
GSMUA_Achr2P02600_001	Banana	cytosol	5.09	39.66
GSMUA_Achr11P...	Banana	plasma membrane	34.73	39.05
GSMUA_Achr11P...	Banana	mitochondrion	31.42	33.97
GSMUA_Achr5P00230_001	Banana	plastid	13.05	26.82
GSMUA_Achr5P17220_001	Banana	extracellular	5.97	24.55
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	6.42	21.8

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	ncoils:Coil
InterPro:DUF_CP12	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975
GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661
GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr11G01450_001	EnsemblPlants:GSMUA_Achr11P01450_001	EnsemblPlants:GSMUA_Achr11T01450_001	InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:M0RNH5	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02672	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148
PANTHER:PTHR43148:SF1	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI00029538AB
SEG:seg	:	:	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G01450_001]

Coordinates

chr11:+:984979..988879

Molecular Weight (calculated)

48197.4 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.018

Length

452 amino acids

Sequence
(BLAST)

001: MVSHAALASS RIPSNTWFHS KAAHSHPTSC FSKRLEVAEF SGLRSSACVT FATNGRDASF SDVLAAQLST ETARAVLVKG ETVAKLKVAI NGFGRIGRNF
101: LRCWHGRNDS PLEVVVVNDS GGVKNASHLL KYDSILGTFK ADVKIVDNET ISVDGKPIKV VSNRDPLQLP WAALGIDIVI EGTGVFVDGP GAGKHIQAGA
201: KKVIITAPAK GADIPTYVVG VNEGDYTHEV SNIVSNASCT TNCLAPFVKV MDEEFGIVKG TMTTTHSYTG DQRLLDASHR DLRRARAAAL NIVPTSTGAA
301: KAVSLVLPQL KGKLNGIALR VPTPNVSVVD LVVNVEKKGM TAEDVNDAFR KAANGPSNGV LAVCDVPLVS VDFRCSDVSS TIDSSLTMVM GDDMVKVVAW
401: YDNEWGYSQR VVDLAHLVAS KWPGIPAQGS GDPLEDFCQT NPETKECKVY EF

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.