Factsheet for GSMUA_Achr5P25410_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	79.19	90.43
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	78.43	86.07
GSMUA_Achr9P02180_001	Banana	endoplasmic reticulum	78.93	84.97
GSMUA_Achr11P...	Banana	plasma membrane	80.96	79.35
GSMUA_Achr5P00240_001	Banana	cytosol	40.86	77.03
GSMUA_Achr11P...	Banana	mitochondrion	71.07	66.99
GSMUA_Achr2P02600_001	Banana	cytosol	9.64	65.52
GSMUA_Achr2P02610_001	Banana	cytosol	11.93	61.04
GSMUA_Achr8P33500_001	Banana	plastid	62.94	57.81
GSMUA_Achr7P03580_001	Banana	plastid	61.93	56.88
GSMUA_Achr5P17220_001	Banana	extracellular	13.45	48.18
GSMUA_Achr11P...	Banana	mitochondrion	42.13	42.24
GSMUA_Achr10P...	Banana	plastid	30.96	38.85
GSMUA_Achr6P16250_001	Banana	plastid	41.12	36.99
GSMUA_Achr11P...	Banana	plastid	41.62	36.28
GSMUA_Achr5P00230_001	Banana	plastid	19.54	35.0
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	9.14	27.07

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr5G25410_001	EnsemblPlants:GSMUA_Achr5P25410_001	EnsemblPlants:GSMUA_Achr5T25410_001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:M0T1L6	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000296A5DB	SEG:seg	:

Description

Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G25410_001]

Coordinates

chr5:-:26430401..26435630

Molecular Weight (calculated)

42943.7 Da

IEP (calculated)

9.450

GRAVY (calculated)

-0.096

Length

394 amino acids

Sequence
(BLAST)

001: MRAPPPSGVV LHGSSERVVA VSRKSRKLYN KYLGNLSHLV ALRNLDSFRL ESSPPIAMAK IKIGINGFGR IGRLVARVAL QSDDVELVAV NDPFISTDYM
101: TYMFKYDTVH GKWKHHEIKV KDTKTLLFGE KQVTVFGIRN PEEIPWGETG AEYVVESTGV FTDKDKAAAH LKGGAKKVII SAPSKDAPMF VVGVNEHTYK
201: PDIDIVSNAS CTTNCLAPLA KVIHDRFGIV EGLMTTVHSI TATQKTVDGP SSKDWRGGRA ASFNIIPSST GAAKAVGKVL PALNGKLTGM AFRVPTVDVS
301: VVDLTVRLEK AASYEQIKVA IKEESEGKLK GILGYVEEDL VSTDFVGDSR SSIFDAKAGI ALNENFVKVV AWYDNEWGYS SRVVDLIRHM ACTK

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.