Factsheet for Zm00001d049641_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23353019
nucleus: 24677780
mitochondrion: 27297264
plasma membrane: 27341663
cytosol: 28250383

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 28250383 doi

CN Meisrimler, F Buck, S Lüthje

University Hospital Eppendorf, Institute of Clinical Chemistry, Campus Science, Martinistraße 52, D-20246 Hamburg, Germany. buck@uke.de., University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Oxidative Stress and Plant Proteomics Group, Ohnhorststraße 18, D-22609 Hamburg, Germany. c_m_2406@yahoo.de., University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Oxidative Stress and Plant Proteomics Group, Ohnhorststraße 18, D-22609 Hamburg, Germany. s.luthje@botanik.uni-hamburg.de.

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012103_P001	cytosol, cytosol, mitochondrion
Zm00001d042453_P001	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	Zm00001d012103_P001	AT2G36460.1	23316205
AT1G13440.1	Zm00001d042453_P001	AT2G36460.1	23316205
AT1G13440.1	Zm00001d012103_P001	AT2G36460.1	23316205
AT1G13440.1	Zm00001d042453_P001	AT2G36460.1	23316205
AT3G04120.1	Zm00001d012103_P001	AT2G36460.1	23316205
AT3G04120.1	Zm00001d042453_P001	AT2G36460.1	23316205
AT3G04120.1	Zm00001d012103_P001	AT2G36460.1	23316205
AT3G04120.1	Zm00001d042453_P001	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24320	Sorghum	cytosol	97.33	97.33
TraesCS7D01G309500.1	Wheat	cytosol	94.36	94.36
TraesCS7B01G213300.1	Wheat	golgi	94.36	94.36
Zm00001d035156_P003	Maize	cytosol	97.33	93.98
Os08t0126300-01	Rice	cytosol	92.28	92.28
TraesCS7A01G313100.1	Wheat	cytosol	90.5	88.41
Zm00001d051001_P002	Maize	cytosol	86.94	86.94
Bra016729.1-P	Field mustard	cytosol	86.65	86.14
Bra026904.1-P	Field mustard	cytosol	86.35	86.09
Solyc06g071920.2.1	Tomato	nucleus	86.05	86.05
CDY49358	Canola	cytosol, mitochondrion	85.76	86.01
Bra040213.1-P	Field mustard	cytosol	85.76	85.5
PGSC0003DMT400069357	Potato	cytosol	85.46	85.46
KRG97466	Soybean	endoplasmic reticulum, nucleus	86.05	85.29
AT3G04120.1	Thale cress	cytosol	85.46	85.21
KRH31426	Soybean	endoplasmic reticulum	85.76	85.0
AT1G13440.1	Thale cress	cytosol	85.16	84.91
Bra040146.1-P	Field mustard	cytosol	85.16	84.91
VIT_01s0010g02460.t01	Wine grape	cytosol	85.46	84.71
PGSC0003DMT400044944	Potato	extracellular	84.57	84.32
KRH63724	Soybean	nucleus	84.57	84.32
Solyc05g014470.2.1	Tomato	extracellular, plastid	84.27	84.02
KRH54227	Soybean	endoplasmic reticulum, nucleus	84.27	84.02
KRH63725	Soybean	endoplasmic reticulum, nucleus	84.27	84.02
Bra019722.1-P	Field mustard	cytosol	73.29	84.01
VIT_17s0000g10430.t01	Wine grape	extracellular	83.98	83.98
KRH54234	Soybean	endoplasmic reticulum, nucleus	83.98	83.73
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	85.76	83.05
PGSC0003DMT400039449	Potato	extracellular	82.79	82.79
Solyc03g111010.2.1	Tomato	plastid	82.79	82.79
CDX74199	Canola	endoplasmic reticulum	85.46	81.82
CDY42906	Canola	cytosol	85.46	81.59
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	94.36	80.92
CDY50169	Canola	cytosol	86.35	78.23
CDY21098	Canola	cytosol	86.35	78.02
CDX98100	Canola	cytosol, mitochondrion, peroxisome	73.29	77.67
CDY26651	Canola	mitochondrion, peroxisome	73.89	74.77
CDY30032	Canola	cytosol	86.05	73.79
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	73.29	72.43
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	86.65	67.91
PGSC0003DMT400044945	Potato	cytosol	35.61	67.8
CDY29987	Canola	cytosol, peroxisome, plastid	73.29	65.69
Zm00001d015383_P001	Maize	plastid	74.18	59.67
Zm00001d053798_P004	Maize	plastid	71.81	58.31
Zm00001d017121_P001	Maize	plastid	86.94	57.45
KRH37937	Soybean	plastid	13.35	51.14
Zm00001d025607_P001	Maize	cytosol, plastid	43.62	39.52
Zm00001d003429_P001	Maize	plastid	46.59	38.96
Zm00001d025593_P001	Maize	plastid	43.62	36.48
Zm00001d025601_P001	Maize	plastid	18.4	36.26
Zm00001d025599_P001	Maize	plastid	43.32	36.23
Zm00001d027488_P001	Maize	extracellular, plastid	48.07	36.08
Zm00001d019945_P001	Maize	plastid	10.68	32.43
Zm00001d015885_P001	Maize	mitochondrion	14.54	32.24
Zm00001d021798_P001	Maize	cytosol	24.33	31.54
Zm00001d016297_P001	Maize	cytosol	10.98	27.01

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	ProteinID:AQK50979.1
ProteinID:AQK50982.1	EMBL:BT088275	UniProt:C4JBS8	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS
InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF58	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI0001A4BD46	EnsemblPlantsGene:Zm00001d049641	EnsemblPlants:Zm00001d049641_P001
EnsemblPlants:Zm00001d049641_T001	SEG:seg	:	:	:	:

Description

glyceraldehyde-3-phosphate dehydrogenase1Glyceraldehyde-3-phosphate dehydrogenase 1%2C cytosolic

Coordinates

chr4:-:38551544..38555126

Molecular Weight (calculated)

36496.6 Da

IEP (calculated)

6.964

GRAVY (calculated)

-0.090

Length

337 amino acids

Sequence
(BLAST)

001: MGKIKIGING FGRIGRLVAR VALQSEDVEL VAVNDPFITT DYMTYMFKYD TVHGHWKHSD ITLKDSKTLL FGDKPVTVFG IRNPEEIPWG EAGAEYVVES
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNED KYTSDVNIVS NASCTTNCLA PLAKVIHDNF GIVEGLMTTV HAITATQKTV DGPSAKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPDLNGKL TGMSFRVPTV DVSVVDLTVR IEKGASYEDI KKAIKAASEG PLKGIMGYAE EDLVSTDFLG DSRSSIFDAK
301: AGIALNDHFV KLVSWYDNEW GYSNRVVDLI RHMFKTQ

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.