Factsheet for Bra008416.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25342	Canola	plastid	98.8	98.8
CDY22281	Canola	plastid	98.55	97.61
Bra003606.1-P	Field mustard	plastid	92.77	90.16
GSMUA_Achr5P00240_001	Banana	cytosol	45.3	89.95
AT1G79530.1	Thale cress	plastid	91.33	89.81
Bra026068.1-P	Field mustard	plastid	87.47	85.61
KRH66238	Soybean	plastid	80.24	79.67
Solyc10g005510.2.1	Tomato	plastid	80.0	79.24
KRH07324	Soybean	extracellular, nucleus	79.52	78.95
TraesCS7A01G478100.2	Wheat	plastid	77.83	78.78
PGSC0003DMT400029242	Potato	plastid	79.52	78.76
TraesCS7B01G380500.1	Wheat	plastid	77.59	78.73
TraesCS6D01G146900.1	Wheat	plastid	78.31	78.12
Os02t0171100-01	Rice	extracellular, plastid	77.35	78.1
VIT_19s0085g00600.t01	Wine grape	plastid	80.72	78.09
EES04595	Sorghum	plastid	77.59	77.97
TraesCS6A01G157500.1	Wheat	plastid	77.83	77.64
HORVU6Hr1G032070.2	Barley	plastid	77.35	77.16
TraesCS6B01G185400.1	Wheat	plastid	77.35	77.16
Os06t0666600-01	Rice	extracellular, plastid	77.11	77.11
Zm00001d015383_P001	Maize	plastid	77.35	76.61
TraesCS7D01G465500.1	Wheat	plastid	77.59	74.54
Zm00001d053798_P004	Maize	plastid	73.01	73.01
Bra040213.1-P	Field mustard	cytosol	58.8	72.19
Bra026904.1-P	Field mustard	cytosol	58.55	71.89
Bra040146.1-P	Field mustard	cytosol	58.31	71.6
Bra016729.1-P	Field mustard	cytosol	58.31	71.39
HORVU7Hr1G108580.4	Barley	plastid	68.92	69.76
Bra019722.1-P	Field mustard	cytosol	49.16	69.39
GSMUA_Achr5P00230_001	Banana	plastid	29.64	55.91
Bra019797.1-P	Field mustard	plastid	43.37	45.11
Bra025219.1-P	Field mustard	plastid	40.96	44.74
Bra026948.1-P	Field mustard	plastid	42.65	44.36
Bra032939.1-P	Field mustard	plastid	34.94	43.41
Bra034927.1-P	Field mustard	plastid	45.54	42.19
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	13.25	41.35

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:3.12.4	Gene3D:3.30.360.10	Gene3D:3.40.50.720	EnsemblPlantsGene:Bra008416
EnsemblPlants:Bra008416.1	EnsemblPlants:Bra008416.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:M4CW19	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF46	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000254689D	SEG:seg	:	:

Description

AT1G79530 (E=3e-190) GAPCP-1 | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase

Coordinates

chrA02:-:15505446..15508021

Molecular Weight (calculated)

43957.3 Da

IEP (calculated)

9.212

GRAVY (calculated)

-0.099

Length

415 amino acids

Sequence
(BLAST)

001: MASSSPLRSA AASVATPFSY DHSKVSASHG FSRSFTSSRF SGAAGPSLSL QKCNARLQPI KATATQAPPA VQRSSSTGKT KVGINGFGRI GRLVLRIATS
101: RDDIDVVAVN DPFIDAKYMA YMLKYDSTHG NFKGTINVID ESTLEINGKK VNVVSKRDPA EIPWADLGAD YVVESSGVFT TLSKAASHLK GGAKKVIISA
201: PSADAPMFVV GVNEKTYQPN MDIVSNASCT TNCLAPLAKV VHEEFGILEG LMTTVHATTA TQKTVDGPSM KDWRGGRGAS QNIIPSSTGA AKAVGKVLPE
301: LNGKLTGMAF RVPTPNVSVV DLTCRLEKGA SYEDVKAAIK FASEGPLKGI LGYTDEDVVS NDFVGDSRSS IFDANAGIGL SKSFVKLVAW YDNEWGYSNR
401: VLDLIEHMAM VAASR

Best Arabidopsis Sequence Match ( AT1G16300.1 )
(BLAST)

001: MALSSLLRSA ATSAAAPRVE LYPSSSYNHS QVTSSLGFSH SLTSSRFSGA AVSTGKYNAK RVQPIKATAT EAPPAVHRSR SSGKTKVGIN GFGRIGRLVL
101: RIATFRDDIE VVAVNDPFID AKYMAYMFKY DSTHGNYKGT INVIDDSTLE INGKQVKVVS KRDPAEIPWA DLGAEYVVES SGVFTTVGQA SSHLKGGAKK
201: VIISAPSADA PMFVVGVNEK TYLPNMDIVS NASCTTNCLA PLAKVVHEEF GILEGLMTTV HATTATQKTV DGPSMKDWRG GRGASQNIIP SSTGAAKAVG
301: KVLPELNGKL TGMAFRVPTP NVSVVDLTCR LEKDASYEDV KAAIKFASEG PLRGILGYTE EDVVSNDFLG DSRSSIFDAN AGIGLSKSFM KLVSWYDNEW
401: GYSNRVLDLI EHMALVAASR

Arabidopsis Description

GAPCP2Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5E924]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.