Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 1
  • nucleus 1
  • cytosol 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 21433289
extracellular: 24083427
plastid: 27992503
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0905800-01 cytosol, cytosol, mitochondrion
Os05t0402700-01 cytosol, cytosol, mitochondrion
Os08t0120600-01 cytosol, cytosol, mitochondrion
Os10t0163340-01 cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13440.1 Os01t0905800-01 AT2G36460.1 23316205
AT1G13440.1 Os05t0402700-01 AT2G36460.1 23316205
AT1G13440.1 Os08t0120600-01 AT2G36460.1 23316205
AT1G13440.1 Os10t0163340-01 AT2G36460.1 23316205
AT1G13440.1 Os01t0905800-01 AT2G36460.1 23316205
AT1G13440.1 Os05t0402700-01 AT2G36460.1 23316205
AT1G13440.1 Os08t0120600-01 AT2G36460.1 23316205
AT1G13440.1 Os10t0163340-01 AT2G36460.1 23316205
AT3G04120.1 Os01t0905800-01 AT2G36460.1 23316205
AT3G04120.1 Os05t0402700-01 AT2G36460.1 23316205
AT3G04120.1 Os08t0120600-01 AT2G36460.1 23316205
AT3G04120.1 Os10t0163340-01 AT2G36460.1 23316205
AT3G04120.1 Os01t0905800-01 AT2G36460.1 23316205
AT3G04120.1 Os05t0402700-01 AT2G36460.1 23316205
AT3G04120.1 Os08t0120600-01 AT2G36460.1 23316205
AT3G04120.1 Os10t0163340-01 AT2G36460.1 23316205
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os02t0601300-01 Rice plasma membrane 93.18 93.18
VIT_01s0010g02460.t01 Wine grape cytosol 91.39 90.59
KRG97466 Soybean endoplasmic reticulum, nucleus 91.39 90.59
KRH31426 Soybean endoplasmic reticulum 91.1 90.29
VIT_17s0000g10430.t01 Wine grape extracellular 90.21 90.21
GSMUA_Achr11P... Banana cytosol 92.28 90.14
PGSC0003DMT400039449 Potato extracellular 89.61 89.61
CDY49358 Canola cytosol, mitochondrion 89.32 89.58
Bra040213.1-P Field mustard cytosol 89.61 89.35
AT1G13440.1 Thale cress cytosol 89.61 89.35
PGSC0003DMT400044944 Potato extracellular 89.61 89.35
Solyc03g111010.2.1 Tomato plastid 89.32 89.32
Bra040146.1-P Field mustard cytosol 89.32 89.05
Solyc05g014470.2.1 Tomato extracellular, plastid 89.32 89.05
Solyc06g071920.2.1 Tomato nucleus 89.02 89.02
Bra016729.1-P Field mustard cytosol 89.32 88.79
AT3G04120.1 Thale cress cytosol 89.02 88.76
Os08t0126300-01 Rice cytosol 88.72 88.72
Bra026904.1-P Field mustard cytosol 88.72 88.46
PGSC0003DMT400069357 Potato cytosol 88.43 88.43
KRH54234 Soybean endoplasmic reticulum, nucleus 88.43 88.17
Bra019722.1-P Field mustard cytosol 76.85 88.1
KRH63724 Soybean nucleus 88.13 87.87
KRH54227 Soybean endoplasmic reticulum, nucleus 87.83 87.57
KRH63725 Soybean endoplasmic reticulum, nucleus 87.83 87.57
CDX92059 Canola cytosol, endoplasmic reticulum, peroxisome 89.61 86.78
GSMUA_AchrUn_... Banana endoplasmic reticulum 91.69 86.07
CDY42906 Canola cytosol 89.32 85.27
CDX74199 Canola endoplasmic reticulum 89.02 85.23
CDX98100 Canola cytosol, mitochondrion, peroxisome 76.85 81.45
CDY50169 Canola cytosol 89.32 80.91
CDY21098 Canola cytosol 89.32 80.7
GSMUA_Achr11P... Banana plasma membrane 92.58 77.61
CDY26651 Canola mitochondrion, peroxisome 76.56 77.48
CDY30032 Canola cytosol 89.32 76.59
CDY21135 Canola cytosol, mitochondrion, peroxisome, plastid 77.45 76.54
PGSC0003DMT400044945 Potato cytosol 39.47 75.14
CDY16090 Canola cytoskeleton, cytosol, peroxisome 88.43 69.3
CDY29987 Canola cytosol, peroxisome, plastid 77.15 69.15
Os02t0171100-01 Rice extracellular, plastid 73.59 60.34
Os06t0666600-01 Rice extracellular, plastid 73.29 59.52
KRH37937 Soybean plastid 13.35 51.14
Os04t0459500-02 Rice plastid 47.18 39.55
Os03t0129300-01 Rice extracellular, plastid 47.77 36.26
Protein Annotations
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12MapMan:2.1.1.4.1Gene3D:3.30.360.10Gene3D:3.40.50.720EntrezGene:4336216
EMBL:AK064960ProteinID:BAF15053.1ProteinID:BAS89797.1ProteinID:CAD79700.2ProteinID:CAE02009.2EMBL:EU267971
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004365GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0006006GO:GO:0006091
GO:GO:0006096GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058
GO:GO:0009987GO:GO:0016491GO:GO:0016620GO:GO:0050661GO:GO:0051287GO:GO:0055114
EMBL:GQ848049InterPro:GlycerAld/Erythrose_P_DHInterPro:GlycerAld_3-P_DH_ASInterPro:GlycerAld_3-P_DH_NAD(P)-bdInterPro:GlycerAld_3-P_DH_catInterPro:Glyceraldehyde-3-P_DH_1
InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os04g0486600EnsemblPlants:Os04t0486600-01PFAM:PF00044PFAM:PF02800PIRSF:PIRSF000149
PRINTS:PR00078ScanProsite:PS00071PANTHER:PTHR10836PANTHER:PTHR10836:SF63UniProt:Q7FAH2SMART:SM00846
SUPFAM:SSF51735SUPFAM:SSF55347TIGRFAMs:TIGR01534UniParc:UPI000021C7E7RefSeq:XP_015635626.1SEG:seg
Description
Glyceraldehyde-3-phosphate dehydrogenase, cytosolic GAPDH2, cytosolic glyceraldehyde-3-phosphate dehydrogenase 2Similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 (EC 1.2.1.12). (Os04t0486600-01);Similar to Glyceralde-3-phosphate dehydrogenase. (Os04t0486600-02)
Coordinates
chr4:+:24305454..24309055
Molecular Weight (calculated)
36775.0 Da
IEP (calculated)
6.797
GRAVY (calculated)
-0.154
Length
337 amino acids
Sequence
(BLAST)
001: MAKIKIGING FGRIGRLVAR VALQSDDVEL VAVNDPFITT DYMTYMFKYD TVHGQWKHHE VKVKDSKTLL FGEKEVTVFG CRNPEEIPWG ETGAEFVVES
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNEK EYKPDIDIVS NASCTTNCLA PLAKVINDRF GIVEGLMTTV HAITATQKTV DGPSSKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPALNGKL TGMAFRVPTV DVSVVDLTVR LEKPASYDQI KAAIKEESEG KLKGILGYVE EDLVSTDFQG DNRSSIFDAK
301: AGIALNDNFV KLVSWYDNEW GYSSRVVDLI RHMYNTQ
Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.