Factsheet for Os01t0974701-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G534200.1	Wheat	mitochondrion	64.66	68.81
TraesCS3B01G610900.1	Wheat	mitochondrion	64.66	68.81
TraesCS3D01G539400.1	Wheat	mitochondrion	64.66	68.81
TraesCS1A01G405700.1	Wheat	mitochondrion	58.62	61.26
HORVU3Hr1G116710.1	Barley	mitochondrion	62.07	59.02
GSMUA_Achr2P19090_001	Banana	mitochondrion	52.59	57.55
Zm00001d041949_P001	Maize	mitochondrion	44.83	48.15
EES02151	Sorghum	mitochondrion, plastid	60.34	47.95
VIT_05s0094g00380.t01	Wine grape	mitochondrion	43.1	45.45
AT5G59865.1	Thale cress	mitochondrion, plastid	43.1	44.25
CDY31588	Canola	nucleus	26.72	39.74
KRH24829	Soybean	mitochondrion	46.55	36.99
Os01t0502800-01	Rice	mitochondrion	16.38	35.85
KRH24832	Soybean	endoplasmic reticulum	39.66	32.62
CDX71070	Canola	mitochondrion	37.93	28.95
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	37.07	28.86
Os04t0414300-00	Rice	mitochondrion	31.03	26.28
Bra025674.1-P	Field mustard	mitochondrion	30.17	24.14
Os07t0549800-01	Rice	mitochondrion	27.59	24.06
Os08t0139000-02	Rice	mitochondrion	28.45	23.4
Os01t0916600-01	Rice	mitochondrion	30.17	23.33
KRH40931	Soybean	mitochondrion	44.83	22.51
Os12t0632000-01	Rice	nucleus	28.45	20.37
Os03t0278800-00	Rice	plastid	29.31	19.65
Os03t0670700-01	Rice	nucleus	28.45	16.84
Os07t0602600-01	Rice	mitochondrion	33.62	16.39
Os12t0502200-01	Rice	mitochondrion	32.76	14.73
Os03t0836200-03	Rice	nucleus	25.86	14.63
Solyc10g081180.1.1	Tomato	nucleus	27.59	14.55
Bra008020.1-P	Field mustard	endoplasmic reticulum	25.86	14.42
Bra008142.1-P	Field mustard	mitochondrion	28.45	12.5
Os10t0321700-01	Rice	mitochondrion	32.76	11.99
Os04t0583800-01	Rice	plastid	12.07	11.86
Bra015926.1-P	Field mustard	mitochondrion	28.45	11.58
Os03t0681900-01	Rice	nucleus	21.55	8.12
Os02t0730800-01	Rice	plastid	27.59	8.02

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4324297	EMBL:AK240763	UniProt:B7F8B0	ProteinID:BAF07470.2
ProteinID:BAS76457.1	ProteinID:EEE56101.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os01g0974701	EnsemblPlants:Os01t0974701-01	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45502	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000188AF9D	RefSeq:XP_015612530.1	SEG:seg	:	:	:

Description

Similar to RNA-binding glycine rich protein (RGP-2). (Os01t0974701-01)

Coordinates

chr1:+:43071516..43072507

Molecular Weight (calculated)

12459.9 Da

IEP (calculated)

10.235

GRAVY (calculated)

-0.247

Length

116 amino acids

Sequence
(BLAST)

001: MLNRRPKLVP YAATPFGILS HPSSTARARA SSSSCRSKLF IGGLSYDTNE TALKDAFSQH GHIIQVKVIC HPVTGKSKGY GFVKFASEDE AAAALHKMGG
101: EVIDGRNIRV HYANSG

Best Arabidopsis Sequence Match ( AT5G59865.1 )
(BLAST)

001: MFSSLFVRCN SITSPLRCFA IRGSCSKLFV GGLSYDTNEP VLKNEFEKYG EIIEVKVICD HKSGKSKGYG FVLFDSEEAA ASALASMDNQ LLEGRNIRVE
101: YAQPKRSLYQ NPK

Arabidopsis Description

Glycine-rich RNA-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BEY1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.