Factsheet for Bra015926.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73070	Canola	mitochondrion	92.28	97.41
Bra008142.1-P	Field mustard	mitochondrion	85.26	92.05
AT1G74230.1	Thale cress	mitochondrion, plastid	83.86	82.7
Bra037056.1-P	Field mustard	mitochondrion	29.12	55.33
Bra013997.1-P	Field mustard	mitochondrion	27.37	53.79
Bra030284.1-P	Field mustard	nucleus	30.53	51.79
Bra035944.1-P	Field mustard	plastid	47.02	50.95
Solyc10g081180.1.1	Tomato	nucleus	37.54	48.64
Bra010693.1-P	Field mustard	nucleus	28.07	48.48
Bra001972.1-P	Field mustard	nucleus	27.72	48.17
Bra031210.1-P	Field mustard	nucleus	28.07	47.62
Bra012986.1-P	Field mustard	mitochondrion	50.88	47.54
Bra011869.1-P	Field mustard	cytosol	26.67	46.91
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	41.4	44.87
Bra025674.1-P	Field mustard	mitochondrion	22.46	44.14
Bra008020.1-P	Field mustard	endoplasmic reticulum	30.18	41.35
Bra014000.1-P	Field mustard	mitochondrion	29.47	37.84
GSMUA_Achr2P19090_001	Banana	mitochondrion	13.33	35.85
Bra002976.1-P	Field mustard	mitochondrion	12.98	35.58
Bra028739.1-P	Field mustard	mitochondrion	17.89	34.93
TraesCS1A01G405700.1	Wheat	mitochondrion	12.63	32.43
Bra029692.1-P	Field mustard	mitochondrion	15.79	31.47
TraesCS3A01G534200.1	Wheat	mitochondrion	11.93	31.19
TraesCS3B01G610900.1	Wheat	mitochondrion	11.58	30.28
Bra020279.1-P	Field mustard	mitochondrion	11.58	30.0
VIT_05s0094g00380.t01	Wine grape	mitochondrion	11.58	30.0
TraesCS3D01G539400.1	Wheat	mitochondrion	11.23	29.36
Bra005189.1-P	Field mustard	plastid	14.74	29.17
Os01t0974701-01	Rice	mitochondrion	11.58	28.45
Bra000516.1-P	Field mustard	mitochondrion	13.33	28.36
HORVU3Hr1G116710.1	Barley	mitochondrion	11.93	27.87
Zm00001d041949_P001	Maize	mitochondrion	10.53	27.78
Bra029020.1-P	Field mustard	plastid	14.39	26.8
KRH24829	Soybean	mitochondrion	12.98	25.34
EES02151	Sorghum	mitochondrion, plastid	12.63	24.66
Bra025205.1-P	Field mustard	nucleus	20.0	24.57
KRH24832	Soybean	endoplasmic reticulum	11.93	24.11
Bra032933.1-P	Field mustard	nucleus	20.0	23.46
Bra008100.1-P	Field mustard	cytosol	6.67	23.17
Bra005798.1-P	Field mustard	nucleus	19.3	17.97
KRH40931	Soybean	mitochondrion	12.63	15.58
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	11.58	12.84
Bra031244.1-P	Field mustard	plastid	13.33	10.19

Protein Annotations

EnsemblPlants:Bra015926.1	EnsemblPlants:Bra015926.1-P	EnsemblPlantsGene:Bra015926	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PFAM:PF00076	PFscan:PS50102	PRINTS:PR01228	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002541E18	UniProt:M4DHE9	MapMan:16.12.5.2	:	:

Description

AT1G74230 (E=2e-078) GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding

Coordinates

chrA07:+:20189094..20190459

Molecular Weight (calculated)

28034.4 Da

IEP (calculated)

4.493

GRAVY (calculated)

-0.549

Length

285 amino acids

Sequence
(BLAST)

001: MAFLSKVGKI FRQTSAHVTA SNSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGNAG GYGAPSGGYG GGGGYGGGAG GYGAPAGGYG GGGYNAPGGG YGGGSSYGGN AAGGGYGGNS PYGGNAGGGG
201: GYGVAGGVGG SDNFAQGSSS NAGFDDKFSS SETLGNDTDH QLESAGGEQF GGSDNQFGDS ENGQTEIGGP DGFDQTDDGD VAKKA

Best Arabidopsis Sequence Match ( AT1G74230.1 )
(BLAST)

001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA

Arabidopsis Description

RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.