Factsheet for HORVU3Hr1G116710.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G610900.1	Wheat	mitochondrion	75.41	84.4
TraesCS3A01G534200.1	Wheat	mitochondrion	74.59	83.49
TraesCS3D01G539400.1	Wheat	mitochondrion	74.59	83.49
TraesCS1A01G405700.1	Wheat	mitochondrion	63.11	69.37
Os01t0974701-01	Rice	mitochondrion	59.02	62.07
GSMUA_Achr2P19090_001	Banana	mitochondrion	48.36	55.66
Zm00001d041949_P001	Maize	mitochondrion	44.26	50.0
EES02151	Sorghum	mitochondrion, plastid	52.46	43.84
AT5G59865.1	Thale cress	mitochondrion, plastid	39.34	42.48
CDY31588	Canola	nucleus	27.05	42.31
VIT_05s0094g00380.t01	Wine grape	mitochondrion	35.25	39.09
KRH24829	Soybean	mitochondrion	43.44	36.3
KRH24832	Soybean	endoplasmic reticulum	38.52	33.33
CDX71070	Canola	mitochondrion	36.89	29.61
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	33.61	27.52
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	22.13	27.27
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	29.51	26.47
Bra025674.1-P	Field mustard	mitochondrion	29.51	24.83
KRH40931	Soybean	mitochondrion	44.26	23.38
HORVU6Hr1G055440.1	Barley	nucleus	27.87	20.99
HORVU3Hr1G093400.1	Barley	plastid	28.69	20.83
HORVU5Hr1G002150.1	Barley	nucleus	28.69	20.23
HORVU4Hr1G059000.4	Barley	plastid	31.15	19.69
HORVU2Hr1G042560.2	Barley	mitochondrion	22.95	16.87
Bra008020.1-P	Field mustard	endoplasmic reticulum	27.87	16.35
HORVU7Hr1G078140.5	Barley	nucleus	28.69	15.22
Solyc10g081180.1.1	Tomato	nucleus	27.05	15.0
Bra008142.1-P	Field mustard	mitochondrion	28.69	13.26
HORVU5Hr1G110370.1	Barley	mitochondrion	29.51	12.29
Bra015926.1-P	Field mustard	mitochondrion	27.87	11.93
HORVU3Hr1G094330.2	Barley	mitochondrion	28.69	11.44
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	27.05	10.58

Protein Annotations

EnsemblPlants:HORVU3Hr1G116710.1	EnsemblPlantsGene:HORVU3Hr1G116710	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR15241	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296B44A
UniProt:M0VY84	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:696230213..696235965

Molecular Weight (calculated)

12955.2 Da

IEP (calculated)

7.513

GRAVY (calculated)

-0.195

Length

122 amino acids

Sequence
(BLAST)

001: MLNWGRNAVL NSRVPVGKLL DRSAGFSSGS KLFVGGLSYD TNEVALKDAF SQHGNVIQVK VICHPVTGRS KGYGFVKFSS ESEADTALEK MNDEVLDGKT
101: IRVDYANVGR SAAVSAAGTA DE

Best Arabidopsis Sequence Match ( AT5G59865.1 )
(BLAST)

001: MFSSLFVRCN SITSPLRCFA IRGSCSKLFV GGLSYDTNEP VLKNEFEKYG EIIEVKVICD HKSGKSKGYG FVLFDSEEAA ASALASMDNQ LLEGRNIRVE
101: YAQPKRSLYQ NPK

Arabidopsis Description

Glycine-rich RNA-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BEY1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.