Factsheet for Bra025674.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 6
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18630.1	Bra018126.1-P	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26743	Canola	mitochondrion	97.93	95.95
CDY19230	Canola	mitochondrion	91.03	94.96
AT1G18630.1	Thale cress	mitochondrion	80.69	75.48
Bra013997.1-P	Field mustard	mitochondrion	40.0	40.0
Bra037056.1-P	Field mustard	mitochondrion	40.0	38.67
Bra001972.1-P	Field mustard	nucleus	39.31	34.76
Bra005189.1-P	Field mustard	plastid	33.79	34.03
GSMUA_Achr2P19090_001	Banana	mitochondrion	24.14	33.02
Bra030284.1-P	Field mustard	nucleus	37.93	32.74
Bra031210.1-P	Field mustard	nucleus	37.93	32.74
Bra010693.1-P	Field mustard	nucleus	36.55	32.12
TraesCS3A01G534200.1	Wheat	mitochondrion	24.14	32.11
TraesCS3D01G539400.1	Wheat	mitochondrion	24.14	32.11
VIT_05s0094g00380.t01	Wine grape	mitochondrion	24.14	31.82
Bra011869.1-P	Field mustard	cytosol	35.17	31.48
TraesCS3B01G610900.1	Wheat	mitochondrion	23.45	31.19
Bra020279.1-P	Field mustard	mitochondrion	23.45	30.91
TraesCS1A01G405700.1	Wheat	mitochondrion	23.45	30.63
Os01t0974701-01	Rice	mitochondrion	24.14	30.17
Bra002976.1-P	Field mustard	mitochondrion	21.38	29.81
Zm00001d041949_P001	Maize	mitochondrion	22.07	29.63
HORVU3Hr1G116710.1	Barley	mitochondrion	24.83	29.51
Bra014000.1-P	Field mustard	mitochondrion	43.45	28.38
Bra028739.1-P	Field mustard	mitochondrion	26.9	26.71
KRH24829	Soybean	mitochondrion	26.21	26.03
EES02151	Sorghum	mitochondrion, plastid	25.52	25.34
KRH24832	Soybean	endoplasmic reticulum	23.45	24.11
Solyc10g081180.1.1	Tomato	nucleus	36.55	24.09
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	43.45	23.95
Bra029692.1-P	Field mustard	mitochondrion	23.45	23.78
Bra035944.1-P	Field mustard	plastid	42.76	23.57
Bra029020.1-P	Field mustard	plastid	24.83	23.53
Bra008142.1-P	Field mustard	mitochondrion	42.07	23.11
Bra015926.1-P	Field mustard	mitochondrion	44.14	22.46
Bra008020.1-P	Field mustard	endoplasmic reticulum	31.72	22.12
Bra000516.1-P	Field mustard	mitochondrion	20.0	21.64
Bra012986.1-P	Field mustard	mitochondrion	45.52	21.64
Bra025205.1-P	Field mustard	nucleus	31.72	19.83
Bra032933.1-P	Field mustard	nucleus	33.1	19.75
Bra008100.1-P	Field mustard	cytosol	10.34	18.29
KRH40931	Soybean	mitochondrion	27.59	17.32
Bra005798.1-P	Field mustard	nucleus	31.72	15.03
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	24.83	14.01
Bra031244.1-P	Field mustard	plastid	23.45	9.12

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra025674	EnsemblPlants:Bra025674.1	EnsemblPlants:Bra025674.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0006950	GO:GO:0008150
GO:GO:0009628	GO:GO:0009651	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4EA67	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45040	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000253F4B9	SEG:seg	:	:	:

Description

AT1G18630 (E=9e-049) GR-RBP6 | GR-RBP6 (glycine-rich RNA-binding protein 6); RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA06:+:7184369..7185308

Molecular Weight (calculated)

15364.4 Da

IEP (calculated)

10.446

GRAVY (calculated)

-0.217

Length

145 amino acids

Sequence
(BLAST)

001: MHYMDLFSKA GNIFRQPRAL QAANAMLQGN LSLTPSKLFV GGLSPTTDVD ILKDVFGRFG KIVDVVVISD RETGVSKGFG FVTYDSIDAA NKAMQQMNDQ
101: ELDGRIIGVN PADSGGGLAR RGGRGGGRGG FGRGGFGRGG YNFVR

Best Arabidopsis Sequence Match ( AT1G18630.1 )
(BLAST)

001: MHYMGLFSRA GNIFRQPRAL QASNAMLQGN LSLTPSKIFV GGLSPSTDVE LLKEAFGSFG KIVDAVVVLD RESGLSRGFG FVTYDSIEVA NNAMQAMQNK
101: ELDGRIIGVH PADSGGGGGG GGFARRGGYG GGRGGYARGG FGRGGFGGGG YGFVR

Arabidopsis Description

RBG6GR-RBP6 [Source:UniProtKB/TrEMBL;Acc:A0A178WQQ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.