Factsheet for Bra012986.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035944.1-P	Field mustard	plastid	74.75	86.69
CDY02175	Canola	mitochondrion	93.44	84.07
AT5G61030.1	Thale cress	mitochondrion	76.07	75.08
VIT_17s0000g07330.t01	Wine grape	plastid	49.51	54.51
GSMUA_Achr9P07090_001	Banana	mitochondrion	41.64	53.36
Bra037056.1-P	Field mustard	mitochondrion	25.57	52.0
EES16016	Sorghum	mitochondrion	42.3	51.6
GSMUA_Achr4P03230_001	Banana	mitochondrion	42.95	51.17
Bra008142.1-P	Field mustard	mitochondrion	44.26	51.14
Bra013997.1-P	Field mustard	mitochondrion	24.26	51.03
Bra015926.1-P	Field mustard	mitochondrion	47.54	50.88
Os12t0502200-01	Rice	mitochondrion	42.95	50.78
TraesCS3D01G424100.1	Wheat	mitochondrion	36.39	50.68
TraesCS3A01G428400.1	Wheat	mitochondrion	37.38	50.44
Bra030284.1-P	Field mustard	nucleus	27.21	49.4
TraesCS3B01G465800.1	Wheat	mitochondrion	36.72	48.48
Zm00001d041750_P001	Maize	mitochondrion	40.66	47.51
Solyc02g066930.2.1	Tomato	nucleus	33.11	46.76
KRH56813	Soybean	mitochondrion	41.97	46.72
KRH03133	Soybean	nucleus	41.97	46.55
PGSC0003DMT400064758	Potato	mitochondrion	38.03	46.22
Bra010693.1-P	Field mustard	nucleus	24.92	46.06
Bra001972.1-P	Field mustard	nucleus	24.59	45.73
Bra025674.1-P	Field mustard	mitochondrion	21.64	45.52
Bra031210.1-P	Field mustard	nucleus	24.92	45.24
Bra011869.1-P	Field mustard	cytosol	23.61	44.44
Zm00001d023734_P003	Maize	nucleus, plastid	40.98	43.55
TraesCS5D01G473100.1	Wheat	mitochondrion	43.61	43.46
TraesCS5B01G470700.1	Wheat	mitochondrion	43.61	43.32
TraesCS5A01G460900.1	Wheat	mitochondrion	43.28	43.28
HORVU5Hr1G110370.1	Barley	mitochondrion	40.98	42.66
Os07t0602600-01	Rice	mitochondrion	33.11	42.44
HORVU3Hr1G094330.2	Barley	mitochondrion	41.97	41.83
Os10t0321700-01	Rice	mitochondrion	42.95	41.32
Zm00001d022065_P001	Maize	mitochondrion	40.33	39.94
TraesCS2D01G184200.1	Wheat	mitochondrion	42.3	39.69
TraesCS2B01G203200.1	Wheat	mitochondrion	41.31	39.5
KXG36643	Sorghum	mitochondrion	40.66	39.24
PGSC0003DMT400003685	Potato	nucleus	38.69	38.94
Bra014000.1-P	Field mustard	mitochondrion	27.54	37.84
Solyc02g088790.2.1	Tomato	extracellular, plastid	43.93	35.92
Bra029692.1-P	Field mustard	mitochondrion	15.41	32.87
Bra020279.1-P	Field mustard	mitochondrion	11.15	30.91
Bra002976.1-P	Field mustard	mitochondrion	10.49	30.77
Bra028739.1-P	Field mustard	mitochondrion	14.43	30.14
Bra008020.1-P	Field mustard	endoplasmic reticulum	20.33	29.81
Bra000516.1-P	Field mustard	mitochondrion	12.79	29.1
Bra005189.1-P	Field mustard	plastid	13.44	28.47
Bra025205.1-P	Field mustard	nucleus	20.98	27.59
Bra032933.1-P	Field mustard	nucleus	21.97	27.57
Bra029020.1-P	Field mustard	plastid	12.46	24.84
KRH54698	Soybean	plastid	44.26	20.03
Bra005798.1-P	Field mustard	nucleus	19.67	19.61
Bra008100.1-P	Field mustard	cytosol	5.25	19.51
TraesCS2A01G176700.1	Wheat	mitochondrion	39.67	16.51
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	9.84	11.67
Bra031244.1-P	Field mustard	plastid	11.15	9.12

Protein Annotations

EnsemblPlants:Bra012986.1	EnsemblPlants:Bra012986.1-P	EnsemblPlantsGene:Bra012986	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44202	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002540506	UniProt:M4D926	MapMan:16.12.5.2	:	:

Description

AT5G61030 (E=7e-048) GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding

Coordinates

chrA03:+:21199858..21201112

Molecular Weight (calculated)

29526.2 Da

IEP (calculated)

4.527

GRAVY (calculated)

-0.467

Length

305 amino acids

Sequence
(BLAST)

001: MAFLSKFGNI LKQTNARGSL STGPSLFQAI RCMSSSKLFI GGMEYGMNED SLREAFSKYG EVVETRVILD RETGRSRGFG FVTFTSTEAA SSAIQALDGQ
101: DLHGRIVKVN YAHDRTSGGG YGGGGGGYGG GGYGGGGYGG GGYGGGGSYG GGAGGYGGGA GGYGSGTGGY GGGASGGYGG GYGASGGYGS SGSGYGEGAS
201: AGAVGGYNGS NGYGEGSTAS AGDVGGYNGS GGYATGNTYG SNNGGFAGEN QFGGNPVGNG SQFGGDNTQF GVGGEAQFGS SMEKPEMING PVGDFEDDTD
301: VAKRA

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.