Factsheet for TraesCS3B01G465800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G428400.1	Wheat	mitochondrion	90.91	92.92
TraesCS3D01G424100.1	Wheat	mitochondrion	87.45	92.24
HORVU3Hr1G094330.2	Barley	mitochondrion	91.34	68.95
Os12t0502200-01	Rice	mitochondrion	65.8	58.91
EES16016	Sorghum	mitochondrion	63.2	58.4
Zm00001d041750_P001	Maize	mitochondrion	62.77	55.56
Zm00001d023734_P003	Maize	nucleus, plastid	63.64	51.22
GSMUA_Achr9P07090_001	Banana	mitochondrion	51.95	50.42
TraesCS3B01G457900.1	Wheat	plastid	34.63	45.71
GSMUA_Achr4P03230_001	Banana	mitochondrion	47.62	42.97
TraesCS5B01G013200.1	Wheat	nucleus	30.74	42.52
TraesCS4B01G020300.1	Wheat	extracellular	29.44	41.72
VIT_17s0000g07330.t01	Wine grape	plastid	49.78	41.52
KRH01278	Soybean	mitochondrion, nucleus, plastid	43.72	41.39
TraesCS6B01G246400.1	Wheat	nucleus	29.0	41.36
PGSC0003DMT400064758	Potato	mitochondrion	44.59	41.04
KRH45033	Soybean	nucleus, plastid	43.29	40.82
Solyc02g066930.2.1	Tomato	nucleus	37.23	39.81
KRH03133	Soybean	nucleus	47.19	39.64
KRH56813	Soybean	mitochondrion	46.75	39.42
Bra035944.1-P	Field mustard	plastid	44.59	39.16
CDY16825	Canola	plastid	44.16	38.78
TraesCS5B01G470700.1	Wheat	mitochondrion	49.35	37.13
AT5G61030.1	Thale cress	mitochondrion	49.35	36.89
Bra012986.1-P	Field mustard	mitochondrion	48.48	36.72
TraesCS4B01G204300.1	Wheat	mitochondrion	15.58	33.96
TraesCS2B01G203200.1	Wheat	mitochondrion	46.75	33.86
CDY02175	Canola	mitochondrion	47.62	32.45
CDX87197	Canola	plastid	45.45	31.91
TraesCS2B01G237100.1	Wheat	mitochondrion	19.05	31.65
PGSC0003DMT400003685	Potato	nucleus	39.39	30.03
TraesCS2B01G312500.1	Wheat	mitochondrion	17.75	29.5
TraesCS3B01G610900.1	Wheat	mitochondrion	13.85	29.36
TraesCS3B01G454200.1	Wheat	mitochondrion	18.18	28.77
Solyc02g088790.2.1	Tomato	extracellular, plastid	45.89	28.42
TraesCS7B01G207500.1	Wheat	mitochondrion	18.18	27.63
TraesCS4B01G204600.1	Wheat	plastid	19.48	26.32
TraesCS5B01G516400.1	Wheat	nucleus	22.08	23.29
TraesCS7B01G227500.2	Wheat	nucleus	22.51	22.61
TraesCS2B01G259400.1	Wheat	nucleus	24.68	19.45
TraesCS4B01G026400.1	Wheat	nucleus	26.84	19.44
KRH54698	Soybean	plastid	42.86	14.69
TraesCS6B01G322400.1	Wheat	plastid	17.75	10.57

Protein Annotations

EnsemblPlants:TraesCS3B01G465800.1	EnsemblPlantsGene:TraesCS3B01G465800	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44202
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:16.12.5.2

Description

No Description!

Coordinates

chr3B:-:708492424..708493920

Molecular Weight (calculated)

23112.4 Da

IEP (calculated)

4.836

GRAVY (calculated)

-0.395

Length

231 amino acids

Sequence
(BLAST)

001: MALVNKLGNL LKKATSSNPT LYQAIRCMSS SKLFVGGLSF NTDEGSLRDA FSHYGEIIDA KIIVDRDTGR SRGFGFITYA AEEQASSAIM ALDGKDLHGR
101: SLRVSAATER TAGFRNGAGY GGGGGSFGGG GYGGGGYGGG GYGGNGGGGG GGYAPPVGND AFSGGSFAPA GSDNFAAGNF GGNHGAPAGS TGGDEFSLGT
201: PGSSFESAKN DDVMDDLFKD DEPDKYASKN V

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.