Factsheet for Solyc02g088790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

nucleus 4
mitochondrion 3
vacuole 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003685	Potato	nucleus	73.99	91.09
Solyc05g053780.2.1	Tomato	mitochondrion	23.32	54.04
Solyc02g066930.2.1	Tomato	nucleus	30.83	53.24
VIT_17s0000g07330.t01	Wine grape	plastid	38.87	52.35
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	16.09	51.72
KRH01278	Soybean	mitochondrion, nucleus, plastid	33.24	50.82
TraesCS3A01G428400.1	Wheat	mitochondrion	30.29	50.0
Os12t0502200-01	Rice	mitochondrion	34.58	50.0
TraesCS3D01G424100.1	Wheat	mitochondrion	29.22	49.77
Solyc10g081180.1.1	Tomato	nucleus	28.95	49.09
GSMUA_Achr9P07090_001	Banana	mitochondrion	31.1	48.74
EES16016	Sorghum	mitochondrion	32.44	48.4
Solyc10g051380.1.1	Tomato	nucleus	16.62	47.69
Solyc10g051390.1.1	Tomato	nucleus	15.01	47.46
KRH45033	Soybean	nucleus, plastid	31.1	47.35
CDY16825	Canola	plastid	32.98	46.77
Bra035944.1-P	Field mustard	plastid	32.71	46.39
TraesCS3B01G465800.1	Wheat	mitochondrion	28.42	45.89
GSMUA_Achr4P03230_001	Banana	mitochondrion	30.56	44.53
Bra012986.1-P	Field mustard	mitochondrion	35.92	43.93
Solyc01g109660.2.1	Tomato	extracellular	20.11	42.86
Zm00001d041750_P001	Maize	mitochondrion	29.76	42.53
Os07t0602600-01	Rice	mitochondrion	27.08	42.44
Zm00001d023734_P003	Maize	nucleus, plastid	32.44	42.16
AT5G61030.1	Thale cress	mitochondrion	34.85	42.07
CDY02175	Canola	mitochondrion	36.19	39.82
HORVU5Hr1G110370.1	Barley	mitochondrion	30.83	39.25
TraesCS2D01G184200.1	Wheat	mitochondrion	33.78	38.77
TraesCS5B01G470700.1	Wheat	mitochondrion	31.64	38.44
TraesCS5A01G460900.1	Wheat	mitochondrion	31.37	38.36
Zm00001d022065_P001	Maize	mitochondrion	31.64	38.31
TraesCS5D01G473100.1	Wheat	mitochondrion	31.37	38.24
HORVU3Hr1G094330.2	Barley	mitochondrion	31.37	38.24
Os10t0321700-01	Rice	mitochondrion	32.17	37.85
TraesCS2B01G203200.1	Wheat	mitochondrion	32.17	37.62
CDX87197	Canola	plastid	32.71	37.08
KXG36643	Sorghum	mitochondrion	31.37	37.03
Solyc10g083240.1.1	Tomato	mitochondrion	12.6	36.43
Solyc07g049270.2.1	Tomato	mitochondrion	13.14	34.75
Solyc10g084630.1.1	Tomato	mitochondrion	11.26	30.43
Solyc07g063900.2.1	Tomato	plastid	11.8	29.14
Solyc09g011210.2.1	Tomato	plastid	9.92	28.03
Solyc06g035610.2.1	Tomato	mitochondrion	10.46	27.08
Solyc10g047130.1.1	Tomato	nucleus	15.01	23.43
Solyc03g071560.2.1	Tomato	nucleus	18.23	21.66
Solyc01g104840.2.1	Tomato	nucleus	11.53	19.28
Solyc11g008210.1.1	Tomato	nucleus	12.33	15.59
TraesCS2A01G176700.1	Wheat	mitochondrion	30.03	15.28
Solyc11g007160.1.1	Tomato	plastid	10.19	9.5

Protein Annotations

EnsemblPlants:Solyc02g088790.2.1	EnsemblPlantsGene:Solyc02g088790.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44202	PFAM:PF00076	PFscan:PS50102	PRINTS:PR01228	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00027688A5	UniProt:K4BC34	MapMan:16.12.5.2	:	:

Description

Glycine-rich RNA-binding protein 3, mitochondrial [Source:Projected from Arabidopsis thaliana (AT5G61030) UniProtKB/Swiss-Prot;Acc:Q9FNR1]

Coordinates

chr2:-:50765008..50767921

Molecular Weight (calculated)

38303.0 Da

IEP (calculated)

5.653

GRAVY (calculated)

-0.680

Length

373 amino acids

Sequence
(BLAST)

001: MVFNHHICLK DTNTTLLNKG ITRQQVFFFI AIIPPKVGLK MAFVNKIGNI LRHGVGKNAN LELSASNGSL FQTIRSMSSS KLFVGGLSYG TDESSLKETF
101: SQYGEVIEAR VILDRETGRS RGFGFISFPS SEEATSAMQA MDGQDLHGRR IKVNYATEKR RDGFGGGYGG EGGNFAGGGG YAASNYGGGG GGFSGGYNSP
201: GGGGYNSAGG GGYGSSSGYN YGGGEGRNFA GSGGYQTNNY GGGFSSGHSS AGGYGSYGGG SSSYGNNSSP VEGGNYGSST PNINYSGQGS SFSGGYGGGN
301: SGNDFGGAPS NNNNSFANTG FGGRSEASYN GSQEQVSADQ GIQSVNEHLG EETSEGNYRD DDDEPKDYAN TRS

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.