Factsheet for TraesCS2D01G184200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G203200.1	Wheat	mitochondrion	88.92	90.6
TraesCS4D01G018500.1	Wheat	nucleus	25.85	50.6
Os07t0602600-01	Rice	mitochondrion	36.31	49.58
GSMUA_Achr9P07090_001	Banana	mitochondrion	36.31	49.58
TraesCS3D01G424100.1	Wheat	mitochondrion	32.92	48.86
TraesCS6D01G199100.1	Wheat	nucleus	23.08	48.39
KXG36643	Sorghum	mitochondrion	46.77	48.1
Zm00001d022065_P001	Maize	mitochondrion	45.54	48.05
GSMUA_Achr4P03230_001	Banana	mitochondrion	37.85	48.05
TraesCS3D01G417800.1	Wheat	plastid	25.54	47.16
VIT_17s0000g07330.t01	Wine grape	plastid	40.0	46.93
TraesCS5D01G020900.1	Wheat	plastid	24.31	45.4
Solyc02g066930.2.1	Tomato	nucleus	29.85	44.91
CDY16825	Canola	plastid	36.31	44.87
TraesCS5D01G473100.1	Wheat	mitochondrion	41.85	44.44
Bra035944.1-P	Field mustard	plastid	35.69	44.11
KRH03133	Soybean	nucleus	36.92	43.64
KRH56813	Soybean	mitochondrion	36.0	42.7
Bra012986.1-P	Field mustard	mitochondrion	39.69	42.3
PGSC0003DMT400064758	Potato	mitochondrion	32.0	41.43
TraesCS4D01G205200.1	Wheat	mitochondrion	13.23	41.35
KRH01278	Soybean	mitochondrion, nucleus, plastid	30.77	40.98
AT5G61030.1	Thale cress	mitochondrion	37.85	39.81
KRH45033	Soybean	nucleus, plastid	29.54	39.18
PGSC0003DMT400003685	Potato	nucleus	35.69	38.28
CDY02175	Canola	mitochondrion	38.77	37.17
CDX87197	Canola	plastid	36.31	35.87
TraesCS2D01G294000.1	Wheat	mitochondrion	15.08	35.25
Solyc02g088790.2.1	Tomato	extracellular, plastid	38.77	33.78
TraesCS2D01G217900.1	Wheat	mitochondrion	14.46	33.57
TraesCS3D01G539400.1	Wheat	mitochondrion	11.08	33.03
TraesCS2A01G176700.1	Wheat	mitochondrion	68.31	30.29
TraesCS7D01G323600.1	Wheat	nucleus	20.62	29.13
TraesCS4D01G205500.1	Wheat	plastid	15.08	28.49
TraesCS5D01G516500.1	Wheat	nucleus	19.08	27.93
TraesCS2D01G238900.1	Wheat	nucleus	22.15	24.57
TraesCS4D01G023800.2	Wheat	nucleus	21.85	22.33
KRH54698	Soybean	plastid	39.08	18.84
TraesCS6D01G273200.1	Wheat	plastid	13.23	11.03

Protein Annotations

EnsemblPlants:TraesCS2D01G184200.1	EnsemblPlantsGene:TraesCS2D01G184200	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR45502
PFAM:PF00076	PFscan:PS50102	PRINTS:PR01228	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
MapMan:16.12.5.2	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:129348629..129351890

Molecular Weight (calculated)

31614.3 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.465

Length

325 amino acids

Sequence
(BLAST)

001: MSFASRMGIV LRRASGSSNS SLLQAVRCMS SSKLFVGGLS YATDDPTLRD AFSGYGDVLE ARIIMDRESG RSKGFGFVTY ASTEAAAAAI SAMDGRDLHG
101: RMIKVEYASD RAGGTRGGGY GTGNYGSGGY GGAGFGSGGG GYAGNGGCYG SGGHGSGGGY GNAGYGGYSS AAGGGEYSSI NNNAVAGGYG GIDGSYNNAS
201: NSGGSAGNNG SAGGNNFPNM YGAGNYNSGA GGNAVLGEKT GSFSSGHSAV AGGNNGSAGG NNSPNTYGAG NFNSGAGSRN GSSYAGGFGG AETLGASKVQ
301: YNGQDDLLGA DYFSESEDRH AGRSA

Best Arabidopsis Sequence Match ( AT5G61030.1 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.