Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G516400.1 | Wheat | nucleus | 97.75 | 99.09 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 93.69 | 98.58 |
| KXG37189 | Sorghum | nucleus | 77.93 | 86.93 |
| Zm00001d034768_P005 | Maize | nucleus | 78.38 | 84.88 |
| Os03t0836200-03 | Rice | nucleus | 76.58 | 82.93 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 99.55 | 70.83 |
| KRH42209 | Soybean | endoplasmic reticulum | 51.8 | 65.34 |
| PGSC0003DMT400076497 | Potato | nucleus | 59.91 | 64.88 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 67.12 | 64.78 |
| PGSC0003DMT400045627 | Potato | nucleus | 61.26 | 63.55 |
| KRH58335 | Soybean | nucleus | 58.56 | 62.5 |
| Bra025205.1-P | Field mustard | nucleus | 59.91 | 57.33 |
| CDX83617 | Canola | nucleus | 59.91 | 57.33 |
| Solyc10g047130.1.1 | Tomato | nucleus | 60.36 | 56.07 |
| CDY13632 | Canola | nucleus | 60.36 | 56.07 |
| Bra032933.1-P | Field mustard | nucleus | 60.81 | 55.56 |
| CDY48990 | Canola | nucleus | 60.81 | 55.56 |
| CDY52166 | Canola | nucleus | 59.01 | 53.91 |
| AT3G26420.1 | Thale cress | nucleus | 57.21 | 51.84 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 61.71 | 48.07 |
| Solyc01g104840.2.1 | Tomato | nucleus | 47.75 | 47.53 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 33.78 | 45.18 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 30.18 | 43.23 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 31.08 | 41.07 |
| TraesCS5D01G020900.1 | Wheat | plastid | 31.53 | 40.23 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 30.18 | 35.08 |
| TraesCS3D01G417800.1 | Wheat | plastid | 25.23 | 31.82 |
| TraesCS2D01G238900.1 | Wheat | nucleus | 40.09 | 30.38 |
| TraesCS4D01G205200.1 | Wheat | mitochondrion | 13.51 | 28.85 |
| TraesCS3D01G539400.1 | Wheat | mitochondrion | 13.96 | 28.44 |
| TraesCS2D01G294000.1 | Wheat | mitochondrion | 17.57 | 28.06 |
| TraesCS2D01G217900.1 | Wheat | mitochondrion | 16.22 | 25.71 |
| TraesCS4D01G023800.2 | Wheat | nucleus | 36.49 | 25.47 |
| TraesCS3D01G424100.1 | Wheat | mitochondrion | 23.42 | 23.74 |
| TraesCS5D01G473100.1 | Wheat | mitochondrion | 30.63 | 22.22 |
| TraesCS4D01G205500.1 | Wheat | plastid | 17.12 | 22.09 |
| TraesCS2D01G184200.1 | Wheat | mitochondrion | 27.93 | 19.08 |
| TraesCS6D01G273200.1 | Wheat | plastid | 14.86 | 8.46 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00343 | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | EnsemblPlantsGene:TraesCS5D01G516500 |
| EnsemblPlants:TraesCS5D01G516500.1 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | TIGR:cd12399 | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:-:539025593..539026704
Molecular Weight (calculated)
24275.1 Da
IEP (calculated)
6.126
GRAVY (calculated)
-1.489
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEDEYRCF VGNLSWSTTD ESLKDAFSKY GKVTEAKVVM DKFSGRSRGF AFVTFDEKKA MEEAIEDMNG LDLEGRAITV DKAQPQGAGR DRNGDRDFDR
101: DRGSRGGRDY GGGRAPRGGG GGDCFKCGKP GHFARECPDG DGGRGDRYGG RDDRYGGGRS DRGGDRSDRG GDRSDRDRSD RGGDRSDRDG DRSERGSDRY
201: SSRSRDGGSG GDRYSRDRSG PY
101: DRGSRGGRDY GGGRAPRGGG GGDCFKCGKP GHFARECPDG DGGRGDRYGG RDDRYGGGRS DRGGDRSDRG GDRSDRDRSD RGGDRSDRDG DRSERGSDRY
201: SSRSRDGGSG GDRYSRDRSG PY
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.