Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032933.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY52166 | Canola | nucleus | 97.12 | 97.12 |
| CDX83617 | Canola | nucleus | 88.48 | 92.67 |
| CDY13632 | Canola | nucleus | 90.95 | 92.47 |
| AT3G26420.1 | Thale cress | nucleus | 82.72 | 82.04 |
| KRH42209 | Soybean | endoplasmic reticulum | 53.09 | 73.3 |
| PGSC0003DMT400076497 | Potato | nucleus | 60.49 | 71.71 |
| KRH58335 | Soybean | nucleus | 58.85 | 68.75 |
| KXG37189 | Sorghum | nucleus | 55.56 | 67.84 |
| PGSC0003DMT400045627 | Potato | nucleus | 59.67 | 67.76 |
| Os03t0836200-03 | Rice | nucleus | 56.79 | 67.32 |
| Zm00001d034768_P005 | Maize | nucleus | 56.38 | 66.83 |
| KXG24163 | Sorghum | nucleus | 55.97 | 62.39 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 53.09 | 61.14 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 55.56 | 60.81 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 54.73 | 60.73 |
| Solyc10g047130.1.1 | Tomato | nucleus | 59.26 | 60.25 |
| TraesCS7B01G227500.2 | Wheat | nucleus | 53.91 | 56.96 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 53.91 | 56.96 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 53.91 | 56.96 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 54.32 | 55.7 |
| Solyc01g104840.2.1 | Tomato | nucleus | 46.91 | 51.12 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 59.67 | 50.88 |
| CDY59763 | Canola | nucleus | 32.92 | 47.9 |
| CDY70933 | Canola | nucleus | 32.51 | 47.02 |
| CDY42616 | Canola | cytosol | 30.04 | 46.5 |
| CDY41969 | Canola | cytosol | 24.28 | 46.09 |
| CDY72366 | Canola | nucleus | 32.1 | 45.61 |
| CDY15876 | Canola | nucleus | 31.69 | 45.56 |
| CDX90323 | Canola | plastid | 30.86 | 45.45 |
| CDY12133 | Canola | cytosol | 28.81 | 44.3 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 56.38 | 43.91 |
| CDY46213 | Canola | nucleus | 21.4 | 42.62 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 28.81 | 41.67 |
| CDX71276 | Canola | nucleus | 28.81 | 40.7 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 32.1 | 38.05 |
| CDY31588 | Canola | nucleus | 11.93 | 37.18 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 29.22 | 37.17 |
| CDY08312 | Canola | mitochondrion | 22.22 | 35.29 |
| CDY06468 | Canola | mitochondrion | 21.4 | 35.14 |
| CDY53035 | Canola | mitochondrion | 21.4 | 34.44 |
| CDY47314 | Canola | mitochondrion | 20.99 | 34.0 |
| CDY19230 | Canola | mitochondrion | 19.34 | 33.81 |
| CDY26743 | Canola | mitochondrion | 20.58 | 33.78 |
| CDY47311 | Canola | mitochondrion | 19.75 | 33.33 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 12.76 | 32.29 |
| CDY09244 | Canola | mitochondrion | 12.35 | 28.85 |
| CDX82164 | Canola | mitochondrion | 16.46 | 27.59 |
| CDY34132 | Canola | nucleus | 28.81 | 27.45 |
| CDY11283 | Canola | nucleus | 34.57 | 27.45 |
| CDY51614 | Canola | mitochondrion | 16.05 | 26.9 |
| CDX80910 | Canola | nucleus | 28.81 | 26.82 |
| CDY04982 | Canola | mitochondrion | 15.64 | 26.03 |
| CDY14089 | Canola | mitochondrion | 15.64 | 26.03 |
| CDY35978 | Canola | mitochondrion, plastid | 14.81 | 25.17 |
| CDX74955 | Canola | plastid | 14.81 | 24.83 |
| CDX91368 | Canola | plastid | 14.81 | 24.83 |
| CDY28003 | Canola | plastid | 14.4 | 24.31 |
| CDY64931 | Canola | plastid | 14.4 | 22.88 |
| CDY43035 | Canola | plastid | 14.4 | 22.88 |
| CDY42466 | Canola | plastid | 14.4 | 22.88 |
| CDY16825 | Canola | plastid | 24.69 | 22.81 |
| CDY43820 | Canola | plastid | 14.4 | 22.29 |
| CDY49123 | Canola | mitochondrion | 22.63 | 20.68 |
| CDY42426 | Canola | mitochondrion | 20.16 | 20.25 |
| CDX96526 | Canola | mitochondrion | 23.05 | 20.14 |
| CDX73070 | Canola | mitochondrion | 22.22 | 20.0 |
| CDY31170 | Canola | mitochondrion, nucleus | 10.7 | 19.7 |
| CDX83260 | Canola | mitochondrion | 10.7 | 19.4 |
| CDX87197 | Canola | plastid | 25.1 | 18.54 |
| CDX71070 | Canola | mitochondrion | 11.52 | 18.42 |
| CDY02175 | Canola | mitochondrion | 25.51 | 18.29 |
| CDY65478 | Canola | endoplasmic reticulum | 15.64 | 18.27 |
| CDY19589 | Canola | plastid | 15.23 | 9.92 |
| CDY06395 | Canola | nucleus | 15.23 | 9.3 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:A0A078IDN2 | UniProt:A0A078IDN2 | EnsemblPlants:CDY48990 |
| ProteinID:CDY48990 | ProteinID:CDY48990.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00092191001 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR45429 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI0002545999 |
| InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : | : |
Description
BnaA02g28060DBnaA02g28060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDN2]
Coordinates
chrLK032805:-:76665..78098
Molecular Weight (calculated)
26655.0 Da
IEP (calculated)
8.564
GRAVY (calculated)
-1.468
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEAEYRCF IGGLAWATSD RGLRDAFEKY GHLTEAKVVL DKFSGRSRGF GFVTFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPQGASG RDHDGDRSRD
101: RDRDRGYDRD RSRPSGGGRG GSGGGDCFKC GKPGHFAREC PDESGRGGGG GGRYSSRDDR YSSKDDRYGG KDDRYSSKDD RYSAKDDRYG AKEDRYGGRD
201: RYGPDRSGER SGGRSRDDGS RGGSGGERHG RAPYDRPRDG GFH
101: RDRDRGYDRD RSRPSGGGRG GSGGGDCFKC GKPGHFAREC PDESGRGGGG GGRYSSRDDR YSSKDDRYGG KDDRYSSKDD RYSAKDDRYG AKEDRYGGRD
201: RYGPDRSGER SGGRSRDDGS RGGSGGERHG RAPYDRPRDG GFH
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.