CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73070	Canola	mitochondrion	93.88	96.67
CDY42426	Canola	mitochondrion	79.86	91.74
CDY49123	Canola	mitochondrion	86.69	90.6
AT1G74230.1	Thale cress	mitochondrion, plastid	87.05	83.74
CDX82164	Canola	mitochondrion	41.01	78.62
CDY51614	Canola	mitochondrion	38.13	73.1
CDY06468	Canola	mitochondrion	29.86	56.08
CDY08312	Canola	mitochondrion	29.86	54.25
CDY53035	Canola	mitochondrion	28.42	52.32
CDY47311	Canola	mitochondrion	26.98	52.08
CDY47314	Canola	mitochondrion	28.06	52.0
CDY15876	Canola	nucleus	30.58	50.3
CDY72366	Canola	nucleus	30.22	49.12
CDY16825	Canola	plastid	46.4	49.05
CDY42616	Canola	cytosol	27.7	49.04
Solyc10g081180.1.1	Tomato	nucleus	38.13	48.18
CDX90323	Canola	plastid	28.42	47.88
CDY59763	Canola	nucleus	28.42	47.31
CDY41969	Canola	cytosol	21.58	46.88
CDY70933	Canola	nucleus	28.06	46.43
CDY46213	Canola	nucleus	19.78	45.08
CDY26743	Canola	mitochondrion	23.74	44.59
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	42.09	44.49
CDY12133	Canola	cytosol	25.18	44.3
CDX71276	Canola	nucleus	27.34	44.19
CDY19230	Canola	mitochondrion	21.58	43.17
CDY02175	Canola	mitochondrion	50.36	41.3
CDY65478	Canola	endoplasmic reticulum	30.58	40.87
CDX87197	Canola	plastid	47.48	40.12
CDY04982	Canola	mitochondrion	18.35	34.93
CDY14089	Canola	mitochondrion	17.99	34.25
CDY28003	Canola	plastid	16.91	32.64
CDY09244	Canola	mitochondrion	11.87	31.73
CDY31588	Canola	nucleus	8.63	30.77
CDY35978	Canola	mitochondrion, plastid	15.11	29.37
CDX83260	Canola	mitochondrion	13.67	28.36
CDX74955	Canola	plastid	14.75	28.28
CDX91368	Canola	plastid	14.75	28.28
CDX82066	Canola	cytosol, nucleus, plastid	9.71	28.12
CDY31170	Canola	mitochondrion, nucleus	13.31	28.03
CDY42466	Canola	plastid	15.11	27.45
CDY43035	Canola	plastid	14.39	26.14
CDY64931	Canola	plastid	14.39	26.14
CDY43820	Canola	plastid	14.39	25.48
CDX83617	Canola	nucleus	19.78	23.71
CDY48990	Canola	nucleus	20.14	23.05
CDX71070	Canola	mitochondrion	12.59	23.03
CDY13632	Canola	nucleus	19.78	23.01
CDY52166	Canola	nucleus	19.78	22.63
CDY11283	Canola	nucleus	19.78	17.97
CDY34132	Canola	nucleus	15.83	17.25
CDX80910	Canola	nucleus	14.03	14.94
CDY19589	Canola	plastid	13.67	10.19
CDY06395	Canola	nucleus	13.31	9.3

Protein Annotations

EnsemblPlants:CDX96526	EnsemblPlantsGene:GSBRNA2T00102709001	Gene3D:3.30.70.330	GO:A0A078E5M2	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
ncoils:Coil	PFAM:PF00076	PFscan:PS50102	PRINTS:PR01228	ProteinID:CDX96526	ProteinID:CDX96526.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDCD2E	MapMan:16.12.5.2	:

Description

BnaA07g31370D

Coordinates

chrLK031894:+:1213521..1215732

Molecular Weight (calculated)

27589.9 Da

IEP (calculated)

4.493

GRAVY (calculated)

-0.552

Length

278 amino acids

Sequence
(BLAST)

001: MAFLSKVGKI FRQTSTHVTA SNSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGNAG GYGAPSGGYG GGAGGYGGGG YNAPAGGYGG GSSYGGNAAG GGYGGNSPYG GNAAGGGGSN FGGGYGVAGG
201: VGGSDNFAQG SSSNAGFDDK FSSSETLGND TDHQLESAGG EQFGGSDNQF GDSENGQTEI GGPDGFDQTD DGDVAKKA

Best Arabidopsis Sequence Match ( AT1G74230.1 )
(BLAST)

001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA

Arabidopsis Description

RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.