CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85279
CDX96185
CDY06428
CDY08148
CDY17185
CDY23727
CDY27030
CDY27533
CDY27959
CDY37307
CDY37710
CDY49453
CDY56908

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	CDX85279	AT2G33550.1	21798944
AT5G54580.1	CDY17185	AT2G33550.1	21798944
AT5G54580.1	CDY23727	AT2G33550.1	21798944
AT5G54580.1	CDY27959	AT2G33550.1	21798944
AT5G54580.1	CDY37710	AT2G33550.1	21798944
AT5G54580.1	CDY06428	AT3G21215.1	21798944
AT5G54580.1	CDY27533	AT3G21215.1	21798944
AT5G54580.1	CDY37307	AT3G21215.1	21798944
AT5G54580.1	CDY08148	AT3G49580.1	21798944
AT5G54580.1	CDX96185	AT5G53060.1	21798944
AT5G54580.1	CDY27030	AT5G53060.1	21798944
AT5G54580.1	CDY49453	AT5G53060.1	21798944
AT5G54580.1	CDY56908	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029020.1-P	Field mustard	plastid	96.82	99.35
CDY43035	Canola	plastid	96.82	99.35
CDY64931	Canola	plastid	92.99	95.42
CDY42466	Canola	plastid	92.99	95.42
AT5G54580.1	Thale cress	mitochondrion, plastid	88.53	89.1
KRH55574	Soybean	mitochondrion, plastid	58.6	63.45
KRH25927	Soybean	mitochondrion, plastid	57.96	62.76
Solyc07g063900.2.1	Tomato	plastid	59.87	62.25
PGSC0003DMT400049607	Potato	plastid	61.78	61.78
Zm00001d024675_P001	Maize	mitochondrion	54.14	60.71
EES14515	Sorghum	plastid	54.14	60.71
GSMUA_Achr11P...	Banana	mitochondrion	41.4	60.19
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	43.31	59.13
Os08t0139000-02	Rice	mitochondrion	52.87	58.87
GSMUA_Achr8P07380_001	Banana	mitochondrion	50.32	58.52
TraesCS7B01G207500.1	Wheat	mitochondrion	54.14	55.92
TraesCS7A01G307200.1	Wheat	plastid	52.87	54.25
VIT_08s0007g00070.t01	Wine grape	mitochondrion	42.68	50.38
CDX91368	Canola	plastid	39.49	42.76
CDX82066	Canola	cytosol, nucleus, plastid	26.11	42.71
CDX74955	Canola	plastid	38.85	42.07
CDY09244	Canola	mitochondrion	21.66	32.69
CDY04982	Canola	mitochondrion	29.94	32.19
CDY14089	Canola	mitochondrion	29.3	31.51
CDY06468	Canola	mitochondrion	28.03	29.73
CDY47311	Canola	mitochondrion	26.75	29.17
CDY08312	Canola	mitochondrion	28.03	28.76
CDY31588	Canola	nucleus	14.01	28.21
CDY41969	Canola	cytosol	22.93	28.12
CDY47314	Canola	mitochondrion	26.75	28.0
CDY46213	Canola	nucleus	21.66	27.87
CDY53035	Canola	mitochondrion	26.75	27.81
CDY19230	Canola	mitochondrion	23.57	26.62
CDY31170	Canola	mitochondrion, nucleus	22.29	26.52
CDX83260	Canola	mitochondrion	21.66	25.37
CDY26743	Canola	mitochondrion	22.93	24.32
CDX82164	Canola	mitochondrion	21.02	22.76
CDY42616	Canola	cytosol	22.29	22.29
CDY28003	Canola	plastid	20.38	22.22
CDY51614	Canola	mitochondrion	20.38	22.07
CDY35978	Canola	mitochondrion, plastid	19.75	21.68
CDY12133	Canola	cytosol	21.66	21.52
CDY70933	Canola	nucleus	22.93	21.43
CDY15876	Canola	nucleus	22.93	21.3
CDX90323	Canola	plastid	22.29	21.21
CDY59763	Canola	nucleus	22.29	20.96
CDY72366	Canola	nucleus	22.29	20.47
CDX71276	Canola	nucleus	22.29	20.35
CDX71070	Canola	mitochondrion	19.11	19.74
CDY42426	Canola	mitochondrion	26.11	16.94
CDY65478	Canola	endoplasmic reticulum	22.29	16.83
CDY49123	Canola	mitochondrion	26.11	15.41
CDX73070	Canola	mitochondrion	25.48	14.81
CDX83617	Canola	nucleus	21.66	14.66
CDY48990	Canola	nucleus	22.29	14.4
CDX96526	Canola	mitochondrion	25.48	14.39
CDY13632	Canola	nucleus	21.66	14.23
CDY16825	Canola	plastid	23.57	14.07
CDY52166	Canola	nucleus	21.66	13.99
CDY19589	Canola	plastid	26.75	11.26
CDY02175	Canola	mitochondrion	24.2	11.21
CDX87197	Canola	plastid	22.93	10.94
CDY06395	Canola	nucleus	25.48	10.05
CDY11283	Canola	nucleus	19.11	9.8
CDY34132	Canola	nucleus	12.1	7.45
CDX80910	Canola	nucleus	10.83	6.51

Protein Annotations

EnsemblPlants:CDY43820	EnsemblPlantsGene:GSBRNA2T00077332001	Gene3D:3.30.70.330	GO:A0A078HYZ2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45392	PFAM:PF00076	PFscan:PS50102	ProteinID:CDY43820	ProteinID:CDY43820.1
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE5DD2	UniProt:A0A078HYZ2	MapMan:16.12.5.2	:

Description

BnaC03g14530DBnaC03g14530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYZ2]

Coordinates

chrLK032569:-:63151..66331

Molecular Weight (calculated)

17069.2 Da

IEP (calculated)

9.657

GRAVY (calculated)

-0.321

Length

157 amino acids

Sequence
(BLAST)

001: MAMAMRLPAI ARAATEMASA PVGLRRLFCS NATNFSFLSP QANSETPARP QADPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSCGYS
101: KGFGFVRYAT LEDSAKGIAG MDGKFLDGWV IFAEYARPRE PYRPQNNMPP SPYGNRY

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.