CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92125
CDX95858
CDY06468
CDY08312
CDY34252
CDY38318
CDY46317
CDY47311
CDY47314
CDY53035

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	CDX92125	AT3G17310.1	21798944
AT3G21215.1	CDX95858	AT3G17310.1	21798944
AT3G21215.1	CDY34252	AT3G22440.1	21798944
AT3G21215.1	CDY38318	AT3G22440.1	21798944
AT3G21215.1	CDY46317	AT3G22440.1	21798944
AT3G21215.1	CDY06468	AT4G13850.1	21798944
AT3G21215.1	CDY08312	AT4G13850.1	21798944
AT3G21215.1	CDY47311	AT4G13850.1	21798944
AT3G21215.1	CDY47314	AT4G13850.1	21798944
AT3G21215.1	CDY53035	AT4G13850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023895.1-P	Field mustard	nucleus	99.53	68.95
CDY27533	Canola	nucleus	99.06	61.22
VIT_09s0018g01880.t01	Wine grape	nucleus	83.49	59.2
AT3G21215.1	Thale cress	nucleus	91.04	56.93
Solyc03g123840.2.1	Tomato	nucleus	79.25	52.5
KRH44644	Soybean	nucleus	78.3	52.37
PGSC0003DMT400023680	Potato	plastid	79.25	50.6
GSMUA_Achr2P05000_001	Banana	cytosol	70.28	49.34
KRH47009	Soybean	nucleus	78.77	47.71
GSMUA_Achr9P19610_001	Banana	cytosol	67.92	47.06
Zm00001d049346_P001	Maize	plastid	70.28	46.27
TraesCS7A01G287800.1	Wheat	nucleus, plastid	69.34	46.08
TraesCS7D01G290200.1	Wheat	nucleus, plastid	68.87	45.77
TraesCS7B01G182400.1	Wheat	nucleus, plastid	68.4	45.45
EES14795	Sorghum	plastid	68.4	45.31
HORVU7Hr1G067800.6	Barley	plastid	68.87	42.44
CDY06428	Canola	nucleus	57.55	39.48
CDX97508	Canola	nucleus	26.42	20.9
CDY23631	Canola	nucleus	26.42	20.74
CDY22555	Canola	nucleus	26.42	16.92

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	GO:A0A078HHE8	UniProt:A0A078HHE8	EnsemblPlants:CDY37307	ProteinID:CDY37307
ProteinID:CDY37307.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00063830001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45381
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE33B2	SEG:seg

Description

BnaA01g25270DBnaA01g25270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHE8]

Coordinates

chrLK032397:+:248723..250832

Molecular Weight (calculated)

23107.4 Da

IEP (calculated)

7.300

GRAVY (calculated)

-0.317

Length

212 amino acids

Sequence
(BLAST)

001: MGFALFSTAQ FALAARDALQ HLVFDAESKS VLHAEMAKKN LFVKRGIVGD SNAYDQSKRL RTGGDCTHSV YSPSPFHPPP PQVWGPPHGY LSPAAPPYDP
101: YGGYHAPPVP MPPSAPIAAP SSYVPVQNVK DNPPCNTLFI GNLGENINEE ELRSLLSAQP GFKQMKVLRQ ERHTVCFIEF EDVNSATNVH HNLQGAVIPS
201: SGSVGMRIQY PF

Best Arabidopsis Sequence Match ( AT3G21215.3 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.