CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97508	Canola	nucleus	82.59	83.21
AT3G13700.1	Thale cress	nucleus	68.89	62.84
Solyc03g121450.2.1	Tomato	nucleus	62.59	60.79
PGSC0003DMT400006410	Potato	nucleus	62.59	60.79
VIT_09s0002g02410.t01	Wine grape	nucleus	58.52	58.09
KRH47143	Soybean	nucleus	56.67	57.74
KRH44168	Soybean	nucleus	58.15	56.68
GSMUA_Achr2P16620_001	Banana	plastid	52.96	44.69
Zm00001d036196_P001	Maize	extracellular, nucleus	47.41	42.24
KXG19320	Sorghum	nucleus	46.67	42.0
TraesCS7A01G106400.1	Wheat	nucleus	45.93	41.75
Os06t0151200-01	Rice	nucleus	46.3	41.67
TraesCS7D01G100500.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	44.44	40.4
TraesCS7B01G005000.1	Wheat	mitochondrion, nucleus	43.7	39.73
CDY22555	Canola	nucleus	32.59	26.59
CDY37307	Canola	nucleus	20.74	26.42
HORVU7Hr1G022410.5	Barley	cytosol, nucleus, plastid	31.85	25.15
CDY27533	Canola	nucleus	29.26	23.03
CDY06428	Canola	nucleus	22.96	20.06

Protein Annotations

EnsemblPlants:CDY23631	EnsemblPlantsGene:GSBRNA2T00023857001	Gene3D:3.30.70.330	GO:A0A078GE50	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45381	PFAM:PF00076	PFscan:PS50102	ProteinID:CDY23631	ProteinID:CDY23631.1
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDF7B7	UniProt:A0A078GE50	MapMan:35.2	:

Description

BnaC05g39630DBnaC05g39630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE50]

Coordinates

chrLK032145:-:550948..553229

Molecular Weight (calculated)

29726.3 Da

IEP (calculated)

4.610

GRAVY (calculated)

-0.729

Length

270 amino acids

Sequence
(BLAST)

001: MAAYHQPYDP YYVYNPLPQP LQHFADEPGA INTLFVSGLP DDVKAREIHN LFRRRPGFES CQLKYTGRGD QVVAFATFSS HGFAMAAMNE LNGVKFDPQT
101: GSTLHIEVAR SNSRRKDRPG SGPYVVIDNR NKETSDDQSD EGESDPYEAQ EPGNSNSPKE IDNTKSEVDS DQDSKAPPTS GYLEKASEGG SGARPCSTLF
201: IANLGPNCTE DELKQLLSRY SGFNILKIRA RGGMPVAFAD FEEIEQATYV MNDLQGNLLS SSDRGGMHIE

Best Arabidopsis Sequence Match ( AT3G13700.2 )
(BLAST)

001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.