Factsheet for VIT_09s0002g02410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47143	Soybean	nucleus	62.87	64.53
PGSC0003DMT400006410	Potato	nucleus	65.81	64.39
Solyc03g121450.2.1	Tomato	nucleus	65.44	64.03
KRH44168	Soybean	nucleus	63.97	62.82
CDY23631	Canola	nucleus	58.09	58.52
Bra027407.1-P	Field mustard	nucleus	56.99	57.84
CDX97508	Canola	nucleus	56.99	57.84
GSMUA_Achr2P16620_001	Banana	plastid	61.4	52.19
AT3G13700.1	Thale cress	nucleus	55.88	51.35
KXG19320	Sorghum	nucleus	52.94	48.0
Zm00001d036196_P001	Maize	extracellular, nucleus	52.94	47.52
Os06t0151200-01	Rice	nucleus	52.21	47.33
TraesCS7D01G100500.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	50.0	45.79
TraesCS7A01G106400.1	Wheat	nucleus	49.63	45.45
TraesCS7B01G005000.1	Wheat	mitochondrion, nucleus	47.79	43.77
VIT_07s0031g00180.t01	Wine grape	nucleus, plastid	37.5	30.63
HORVU7Hr1G022410.5	Barley	cytosol, nucleus, plastid	36.03	28.66
VIT_09s0018g01880.t01	Wine grape	nucleus	27.21	24.75

Protein Annotations

EntrezGene:100263499	wikigene:100263499	Gene3D:3.30.70.330	MapMan:35.2	ProteinID:CBI35969	ProteinID:CBI35969.3
UniProt:D7U023	EMBL:FN596494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100263499	wikigene:LOC100263499	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45381	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
TIGR:TC62986	UniParc:UPI00015C8BB0	ArrayExpress:VIT_09s0002g02410	EnsemblPlantsGene:VIT_09s0002g02410	EnsemblPlants:VIT_09s0002g02410.t01	unigene:Vvi.11627
RefSeq:XP_002279868	RefSeq:XP_002279868.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:2181873..2186912

Molecular Weight (calculated)

29646.6 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.638

Length

272 amino acids

Sequence
(BLAST)

001: MSHHAYDPYY HHAQGDRSGI NTLFVSGLPD DVKPREIHNL FRRRPGFDSC QLKYTGRGNQ VVAFATFFNH QTAVAALHAL NGVKFDPQTG SILHIELARS
101: NSRRKRVPGS GAYVVIDKRS KTSTNAHETS SDDGDSESDE PAKTSNPDSG NNDDLVTAKS GEMAVDPDST LTAVNEQPEK TTDAGLPPCS TLFIANLGPT
201: CTEDELKQVL SQYPGFNVLK MRAKGGMPVA FADFEEIEQA NKAMDALQGS MLASSDRGGM HLEYARSKMR KP

Best Arabidopsis Sequence Match ( AT3G13700.2 )
(BLAST)

001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.