Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036196_P001 | Maize | extracellular, nucleus | 70.0 | 69.31 |
| KXG19320 | Sorghum | nucleus | 68.0 | 68.0 |
| TraesCS7D01G100500.1 | Wheat | cytosol, mitochondrion, nucleus, peroxisome | 66.0 | 66.67 |
| TraesCS7A01G106400.1 | Wheat | nucleus | 65.67 | 66.33 |
| TraesCS7B01G005000.1 | Wheat | mitochondrion, nucleus | 62.0 | 62.63 |
| VIT_09s0002g02410.t01 | Wine grape | nucleus | 47.33 | 52.21 |
| GSMUA_Achr2P16620_001 | Banana | plastid | 52.0 | 48.75 |
| PGSC0003DMT400006410 | Potato | nucleus | 44.67 | 48.2 |
| KRH47143 | Soybean | nucleus | 42.33 | 47.92 |
| Solyc03g121450.2.1 | Tomato | nucleus | 44.0 | 47.48 |
| CDY23631 | Canola | nucleus | 41.67 | 46.3 |
| KRH44168 | Soybean | nucleus | 42.0 | 45.49 |
| CDX97508 | Canola | nucleus | 39.33 | 44.03 |
| Bra027407.1-P | Field mustard | nucleus | 39.33 | 44.03 |
| HORVU7Hr1G022410.5 | Barley | cytosol, nucleus, plastid | 47.67 | 41.81 |
| AT3G13700.1 | Thale cress | nucleus | 39.67 | 40.2 |
| Os06t0687500-01 | Rice | plastid | 19.33 | 26.48 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:4340149 | EMBL:AK068636 | ProteinID:BAD69059.1 | ProteinID:BAD69323.1 |
| ProteinID:BAF18741.1 | ProteinID:BAS96189.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os06g0151200 | EnsemblPlants:Os06t0151200-01 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR45381 | UniProt:Q5VMK2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000045803E | RefSeq:XP_015642471.1 | SEG:seg | : | : |
Description
Nucleotide-binding, alpha-beta plait domain containing protein. (Os06t0151200-01)
Coordinates
chr6:-:2635908..2641269
Molecular Weight (calculated)
32652.6 Da
IEP (calculated)
4.826
GRAVY (calculated)
-0.770
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSHHLPPP PGDPYYVYAP HPYPDPQRQG VLTLFVAGLP DDVKPREIHN LFSSRPGFDH CLLEYTGRGN QVVAFVSFVN HQAALSAMSA LNGTVFDPDT
101: GDRLHIELAK SSSRKRHGDG GVYRVVDKRL KRKERAADHE NAGDGGNDDD AWGEDDNGGN DGDGGSDEPL DTENDDSDEK NELPAERSSG QPGLKQHRGQ
201: SLSDDQPDKL SSDIPPCSTL FVANLGHSCT EEELKEVLSK QPGFHLLKMR RRGGMPVAFA DFTDIESSTA AMDALQGTVL ASSDADGLQI EYARSKMRKS
101: GDRLHIELAK SSSRKRHGDG GVYRVVDKRL KRKERAADHE NAGDGGNDDD AWGEDDNGGN DGDGGSDEPL DTENDDSDEK NELPAERSSG QPGLKQHRGQ
201: SLSDDQPDKL SSDIPPCSTL FVANLGHSCT EEELKEVLSK QPGFHLLKMR RRGGMPVAFA DFTDIESSTA AMDALQGTVL ASSDADGLQI EYARSKMRKS
001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.