Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KXG19320 | Sorghum | nucleus | 77.56 | 78.33 |
Os06t0151200-01 | Rice | nucleus | 69.31 | 70.0 |
TraesCS7A01G106400.1 | Wheat | nucleus | 62.71 | 63.97 |
TraesCS7D01G100500.1 | Wheat | cytosol, mitochondrion, nucleus, peroxisome | 61.06 | 62.29 |
TraesCS7B01G005000.1 | Wheat | mitochondrion, nucleus | 58.42 | 59.6 |
VIT_09s0002g02410.t01 | Wine grape | nucleus | 47.52 | 52.94 |
KRH47143 | Soybean | nucleus | 42.9 | 49.06 |
PGSC0003DMT400006410 | Potato | nucleus | 44.22 | 48.2 |
GSMUA_Achr2P16620_001 | Banana | plastid | 50.83 | 48.12 |
Solyc03g121450.2.1 | Tomato | nucleus | 43.56 | 47.48 |
CDY23631 | Canola | nucleus | 42.24 | 47.41 |
KRH44168 | Soybean | nucleus | 42.9 | 46.93 |
Bra027407.1-P | Field mustard | nucleus | 39.93 | 45.15 |
CDX97508 | Canola | nucleus | 39.93 | 45.15 |
AT3G13700.1 | Thale cress | nucleus | 41.91 | 42.91 |
HORVU7Hr1G022410.5 | Barley | cytosol, nucleus, plastid | 44.55 | 39.47 |
Zm00001d014533_P001 | Maize | extracellular | 31.68 | 30.77 |
Zm00001d049346_P001 | Maize | plastid | 27.06 | 25.47 |
Protein Annotations
EntrezGene:100217110 | Gene3D:3.30.70.330 | MapMan:35.2 | ProteinID:AQK80428.1 | UniProt:B4FLG1 | EMBL:BT037949 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45381 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00017B6AE4 | EnsemblPlantsGene:Zm00001d036196 | EnsemblPlants:Zm00001d036196_P001 | EnsemblPlants:Zm00001d036196_T001 |
SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr6:+:76728367..76733964
Molecular Weight (calculated)
33041.8 Da
IEP (calculated)
4.661
GRAVY (calculated)
-0.793
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGMSLSHRL PPAAAAVDPY YVYAAHPDPQ RQGVLTLFVA GLPDDVKPRE IHNLFSHRPA FDHCLLEYTG RGNQAVAFVT FFTHEAALSA MSSLNGTIFD
101: PESGDRLHIE LAKSTSRRPR GGVEGYRVID KRANKTEGNA DHENVGDEDD DEVWGEDEDG GNDNNGDGGS DEPSGTENEN PSDKNELPTD QSDQPGHKQQ
201: NGQSLSNEGR DKSSSDIPPC STIFIANLGH TCTEDELKEV LSKEPGFHVL KMRRRGGMPV AFADFTDIES STAAMNRLQG TVLASSDNDG LHIEYARSKM
301: RKS
101: PESGDRLHIE LAKSTSRRPR GGVEGYRVID KRANKTEGNA DHENVGDEDD DEVWGEDEDG GNDNNGDGGS DEPSGTENEN PSDKNELPTD QSDQPGHKQQ
201: NGQSLSNEGR DKSSSDIPPC STIFIANLGH TCTEDELKEV LSKEPGFHVL KMRRRGGMPV AFADFTDIES STAAMNRLQG TVLASSDNDG LHIEYARSKM
301: RKS
001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.