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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus

Predictor Summary:
  • mitochondrion 2
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, nucleus
Any Predictor:mitochondrion, nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
extracellular: 20408568
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG19320 Sorghum nucleus 77.56 78.33
Os06t0151200-01 Rice nucleus 69.31 70.0
TraesCS7A01G106400.1 Wheat nucleus 62.71 63.97
TraesCS7D01G100500.1 Wheat cytosol, mitochondrion, nucleus, peroxisome 61.06 62.29
TraesCS7B01G005000.1 Wheat mitochondrion, nucleus 58.42 59.6
VIT_09s0002g02410.t01 Wine grape nucleus 47.52 52.94
KRH47143 Soybean nucleus 42.9 49.06
PGSC0003DMT400006410 Potato nucleus 44.22 48.2
GSMUA_Achr2P16620_001 Banana plastid 50.83 48.12
Solyc03g121450.2.1 Tomato nucleus 43.56 47.48
CDY23631 Canola nucleus 42.24 47.41
KRH44168 Soybean nucleus 42.9 46.93
Bra027407.1-P Field mustard nucleus 39.93 45.15
CDX97508 Canola nucleus 39.93 45.15
AT3G13700.1 Thale cress nucleus 41.91 42.91
HORVU7Hr1G022410.5 Barley cytosol, nucleus, plastid 44.55 39.47
Zm00001d014533_P001 Maize extracellular 31.68 30.77
Zm00001d049346_P001 Maize plastid 27.06 25.47
Protein Annotations
EntrezGene:100217110Gene3D:3.30.70.330MapMan:35.2ProteinID:AQK80428.1UniProt:B4FLG1EMBL:BT037949
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102PANTHER:PTHR45381InterPro:RBD_domain_sfInterPro:RRM_dom
SMART:SM00360SUPFAM:SSF54928UniParc:UPI00017B6AE4EnsemblPlantsGene:Zm00001d036196EnsemblPlants:Zm00001d036196_P001EnsemblPlants:Zm00001d036196_T001
SEG:seg:::::
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr6:+:76728367..76733964
Molecular Weight (calculated)
33041.8 Da
IEP (calculated)
4.661
GRAVY (calculated)
-0.793
Length
303 amino acids
Sequence
(BLAST)
001: MSGMSLSHRL PPAAAAVDPY YVYAAHPDPQ RQGVLTLFVA GLPDDVKPRE IHNLFSHRPA FDHCLLEYTG RGNQAVAFVT FFTHEAALSA MSSLNGTIFD
101: PESGDRLHIE LAKSTSRRPR GGVEGYRVID KRANKTEGNA DHENVGDEDD DEVWGEDEDG GNDNNGDGGS DEPSGTENEN PSDKNELPTD QSDQPGHKQQ
201: NGQSLSNEGR DKSSSDIPPC STIFIANLGH TCTEDELKEV LSKEPGFHVL KMRRRGGMPV AFADFTDIES STAAMNRLQG TVLASSDNDG LHIEYARSKM
301: RKS
Best Arabidopsis Sequence Match ( AT3G13700.2 )
(BLAST)
001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.