Factsheet for Zm00001d014533_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88849	Sorghum	nucleus	90.06	90.65
TraesCS7D01G432900.1	Wheat	nucleus	64.1	63.09
TraesCS7A01G443800.1	Wheat	nucleus	63.78	62.78
TraesCS7B01G342500.1	Wheat	nucleus	63.46	62.46
GSMUA_Achr10P...	Banana	nucleus	25.0	61.9
Os06t0687500-01	Rice	plastid	38.78	55.25
HORVU7Hr1G100830.1	Barley	plastid	65.06	54.57
GSMUA_Achr9P11330_001	Banana	nucleus	51.92	50.78
Solyc02g093120.2.1	Tomato	nucleus	30.45	50.0
VIT_07s0031g00180.t01	Wine grape	nucleus, plastid	52.24	48.95
PGSC0003DMT400010226	Potato	nucleus	48.08	47.47
KRH77037	Soybean	nucleus	47.76	44.74
KRH28438	Soybean	nucleus	46.79	43.2
GSMUA_Achr10P...	Banana	nucleus	35.26	42.47
AT2G42240.4	Thale cress	nucleus	41.03	42.38
CDY22555	Canola	nucleus	38.46	36.25
Zm00001d036196_P001	Maize	extracellular, nucleus	30.77	31.68
Zm00001d049346_P001	Maize	plastid	28.21	27.33

Protein Annotations

EntrezGene:100193418	Gene3D:3.30.70.330	MapMan:35.2	UniProt:A0A1D6GU19	ProteinID:AQK66485.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45381	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0008435796	EnsemblPlantsGene:Zm00001d014533	EnsemblPlants:Zm00001d014533_P001	EnsemblPlants:Zm00001d014533_T001	SEG:seg

Description

RNA-binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr5:-:52133840..52138873

Molecular Weight (calculated)

33825.7 Da

IEP (calculated)

9.434

GRAVY (calculated)

-0.441

Length

312 amino acids

Sequence
(BLAST)

001: MAAYFNHSSS YPPPPPPPGT SPYGAYRHAY PPAPAPPAAY GAYYDRAEQA LPARDEVRTL FIAGLPADAK PREVYNLFRD FPGYVSSHLR TGKSSQAYAF
101: AVFADQQSAL AALSATNGMV FDLEKNCSLH VDLAKSNSRS KRLRSDDTSP YSPEKRNRKP RGFPDSGAGS NIYISGMGST SHSLSGYPSA QSYTSLESSA
201: SLSKDPSTFA PQNNPPCPTL FVANLAPACS EQQLIDVFSS CAGFVKLKMQ NKLGAPVAFV DFKDAISSTE AINRLQGVIL YSSSGEGMRL DFLTCFRYAK
301: SRMGLRKRDK HP

Best Arabidopsis Sequence Match ( AT2G42240.1 )
(BLAST)

001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN

Arabidopsis Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.