Factsheet for GSMUA_Achr9P11330_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	28.84	73.02
GSMUA_Achr10P...	Banana	nucleus	46.08	56.76
Solyc02g093120.2.1	Tomato	nucleus	32.6	54.74
EER88849	Sorghum	nucleus	51.72	53.23
VIT_07s0031g00180.t01	Wine grape	nucleus, plastid	55.17	52.85
Zm00001d014533_P001	Maize	extracellular	50.78	51.92
PGSC0003DMT400010226	Potato	nucleus	49.84	50.32
TraesCS7D01G432900.1	Wheat	nucleus	48.9	49.21
TraesCS7A01G443800.1	Wheat	nucleus	48.9	49.21
KRH28438	Soybean	nucleus	51.72	48.82
TraesCS7B01G342500.1	Wheat	nucleus	48.28	48.58
KRH77037	Soybean	nucleus	50.16	48.05
AT2G42240.4	Thale cress	nucleus	43.26	45.7
HORVU7Hr1G100830.1	Barley	plastid	49.84	42.74
Os06t0687500-01	Rice	plastid	29.15	42.47
CDY22555	Canola	nucleus	42.63	41.09
GSMUA_Achr2P16620_001	Banana	plastid	35.42	35.31
GSMUA_Achr2P05000_001	Banana	cytosol	26.65	28.15
GSMUA_Achr9P19610_001	Banana	cytosol	26.96	28.1

Protein Annotations

EnsemblPlants:GSMUA_Achr9P11330_001	EnsemblPlants:GSMUA_Achr9T11330_001	EnsemblPlantsGene:GSMUA_Achr9G11330_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45381	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002959AD3	UniProt:M0TZE2	MapMan:35.2	:	:

Description

Putative RNA-binding protein with multiple splicing 2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G11330_001]

Coordinates

chr9:+:7361696..7367747

Molecular Weight (calculated)

35485.7 Da

IEP (calculated)

9.682

GRAVY (calculated)

-0.665

Length

319 amino acids

Sequence
(BLAST)

001: MAAAYYHPPP VAAHYPYYPP PPPLTGTPHP PYHHHLPAPV PPSRTHLSPQ HYGTPADHPS RDEVRTLFIA GLPDDVKPRE IYNLFREFPG YQSAQLRRSG
101: QSSQAYAFTV FTDQQSALSA MRALNGLMFD LERESTLYID LAKSNSRFKR SRTDDGVSYS YDKRVRGSVA YSRGFSDSGA GSHIHMPGMV NSAYSLNDFP
201: SAQSQTNFGY EAKHKMLNNS TYTPQSNPPC PTLFVANLGP KSSEQELAQV FSRCPGFLKL KMQNKNGVPV AFVDFQDTGS STGARNHLQG TILYSSVGEG
301: MRLEYAKSRM GLRKREKNT

Best Arabidopsis Sequence Match ( AT2G42240.1 )
(BLAST)

001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN

Arabidopsis Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.