Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g093120.2.1 | Tomato | nucleus | 55.56 | 36.84 |
| GSMUA_Achr9P11330_001 | Banana | nucleus | 73.02 | 28.84 |
| EER88849 | Sorghum | nucleus | 65.08 | 26.45 |
| Zm00001d014533_P001 | Maize | extracellular | 61.9 | 25.0 |
| PGSC0003DMT400010226 | Potato | nucleus | 57.14 | 22.78 |
| TraesCS7D01G432900.1 | Wheat | nucleus | 57.14 | 22.71 |
| TraesCS7B01G342500.1 | Wheat | nucleus | 56.35 | 22.4 |
| TraesCS7A01G443800.1 | Wheat | nucleus | 56.35 | 22.4 |
| VIT_07s0031g00180.t01 | Wine grape | nucleus, plastid | 58.73 | 22.22 |
| KRH28438 | Soybean | nucleus | 58.73 | 21.89 |
| KRH77037 | Soybean | nucleus | 57.14 | 21.62 |
| HORVU7Hr1G100830.1 | Barley | plastid | 58.73 | 19.89 |
| AT2G42240.4 | Thale cress | nucleus | 47.62 | 19.87 |
| CDY22555 | Canola | nucleus | 50.0 | 19.03 |
| GSMUA_Achr2P16620_001 | Banana | plastid | 38.89 | 15.31 |
| GSMUA_Achr2P05000_001 | Banana | cytosol | 31.75 | 13.24 |
| GSMUA_Achr9P19610_001 | Banana | cytosol | 31.75 | 13.07 |
| GSMUA_Achr10P... | Banana | nucleus | 13.49 | 6.56 |
| Os06t0687500-01 | Rice | plastid | 6.35 | 3.65 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P09000_001 | EnsemblPlants:GSMUA_Achr10T09000_001 | EnsemblPlantsGene:GSMUA_Achr10G09000_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45381 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0002967AE4 | UniProt:M0RGM6 | MapMan:35.2 | : | : | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G09000_001]
Coordinates
chr10:-:19010831..19012510
Molecular Weight (calculated)
13807.5 Da
IEP (calculated)
9.618
GRAVY (calculated)
-0.441
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSSHRTADG GFISNNSSTY APLSNPPCPT LFVANLGPNC SEQELAQVFS RCPGFIKLKM QNKNGLPVAF VDFQDVNSST GALNHLQGTI LYSSVGEGMR
101: LEYAKSRMGL RKREKRTYIT RANQCG
101: LEYAKSRMGL RKREKRTYIT RANQCG
001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.