CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G42240.4	Thale cress	nucleus	54.68	59.93
GSMUA_Achr10P...	Banana	nucleus	19.03	50.0
Solyc02g093120.2.1	Tomato	nucleus	28.7	50.0
PGSC0003DMT400010226	Potato	nucleus	45.92	48.1
VIT_07s0031g00180.t01	Wine grape	nucleus, plastid	47.43	47.15
KRH77037	Soybean	nucleus	45.02	44.74
KRH28438	Soybean	nucleus	45.02	44.08
GSMUA_Achr9P11330_001	Banana	nucleus	41.09	42.63
Zm00001d014533_P001	Maize	extracellular	36.25	38.46
EER88849	Sorghum	nucleus	35.65	38.06
TraesCS7D01G432900.1	Wheat	nucleus	35.65	37.22
TraesCS7B01G342500.1	Wheat	nucleus	35.35	36.91
TraesCS7A01G443800.1	Wheat	nucleus	35.35	36.91
GSMUA_Achr10P...	Banana	nucleus	27.79	35.52
Os06t0687500-01	Rice	plastid	22.96	34.7
CDX97508	Canola	nucleus	27.79	34.33
HORVU7Hr1G100830.1	Barley	plastid	36.86	32.8
CDY23631	Canola	nucleus	26.59	32.59
CDY37307	Canola	nucleus	16.92	26.42
CDY27533	Canola	nucleus	26.59	25.66
CDY06428	Canola	nucleus	19.34	20.71

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	GO:A0A078G7X9	UniProt:A0A078G7X9	EnsemblPlants:CDY22555	ProteinID:CDY22555
ProteinID:CDY22555.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00019153001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45381
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE9B2E	SEG:seg

Description

BnaC03g23650DBnaC03g23650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7X9]

Coordinates

chrLK032132:+:584870..586961

Molecular Weight (calculated)

36349.7 Da

IEP (calculated)

9.283

GRAVY (calculated)

-0.025

Length

331 amino acids

Sequence
(BLAST)

001: MDDLSAYYTH YNLPSIIPPP LPPGVAPIPV TLIHPVYLPT QSSTGDVRTL FVAGLPEDVK PREIYNLFRE FPGYETSHLR ISGGSKPFAF AVFSDLQSAL
101: AVMHALNGMV FDLEKYSTLY IDLAKSNPKS KRSRTGKFWI LSALESLKKT KPWSNTAESA GFGSFHTPGM SSSAHNTIGF SPAQRAHFLV TWQCLDYVSL
201: LHTLFHVICL EVQGVANVAG RAMSTPKSNN AAEPCPTLFI ANLGPNCTES ELVQVFSRCR GFLKLKIQGT YGTHVAFVDF QDVSCSSEAL HALQGTVLYS
301: SLTGVGLRLQ FNLTSSTRYA RSRMGMRKKI S

Best Arabidopsis Sequence Match ( AT2G42240.1 )
(BLAST)

001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN

Arabidopsis Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.