Factsheet for VIT_07s0031g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093120.2.1	Tomato	nucleus	36.94	64.74
PGSC0003DMT400010226	Potato	nucleus	57.96	61.08
KRH77037	Soybean	nucleus	58.86	58.86
GSMUA_Achr10P...	Banana	nucleus	22.22	58.73
KRH28438	Soybean	nucleus	58.86	57.99
GSMUA_Achr9P11330_001	Banana	nucleus	52.85	55.17
Zm00001d014533_P001	Maize	extracellular	48.95	52.24
AT2G42240.4	Thale cress	nucleus	46.85	51.66
EER88849	Sorghum	nucleus	48.05	51.61
CDY22555	Canola	nucleus	47.15	47.43
GSMUA_Achr10P...	Banana	nucleus	36.64	47.1
TraesCS7D01G432900.1	Wheat	nucleus	44.74	47.0
TraesCS7A01G443800.1	Wheat	nucleus	44.44	46.69
TraesCS7B01G342500.1	Wheat	nucleus	44.14	46.37
Os06t0687500-01	Rice	plastid	27.63	42.01
HORVU7Hr1G100830.1	Barley	plastid	46.55	41.67
VIT_09s0002g02410.t01	Wine grape	nucleus	30.63	37.5
VIT_09s0018g01880.t01	Wine grape	nucleus	29.43	32.78

Protein Annotations

EntrezGene:100247532	wikigene:100247532	Gene3D:3.30.70.330	MapMan:35.2	ProteinID:CBI21383	ProteinID:CBI21383.3
UniProt:D7SVT4	EMBL:FN595233	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100247532	wikigene:LOC100247532	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC64311
UniParc:UPI0001BE18C6	ArrayExpress:VIT_07s0031g00180	EnsemblPlantsGene:VIT_07s0031g00180	EnsemblPlants:VIT_07s0031g00180.t01	unigene:Vvi.12488	unigene:Vvi.25834
RefSeq:XP_002283118	RefSeq:XP_002283118.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:16393994..16400841

Molecular Weight (calculated)

36278.0 Da

IEP (calculated)

8.550

GRAVY (calculated)

-0.534

Length

333 amino acids

Sequence
(BLAST)

001: MAAYYPPPSA HPPPPFPYYQ PHPPPLGPPA PPPQQVAPPP PPPPPQQQPF LFPHQPPPPP FASYAPPLYP QTSVDEVRTL FIAGLPEDVK PREIYNLFRE
101: FPGYESSHLR SPSQNSQPFA FAVFLDQQSA IAAMHALNGM VFDLEKGSTL YIDLAKSNSR SKRSRADDER PGLDKKVKGS AGFSRPPDSG VGSVHMPGMG
201: NSAYSMIGYP STQSHGNFDG RALNETPAKL NNSSAPYFPQ NATPCPTLFV ANLGPTCSEQ ELIDIFSRCP GFLKLKMQST YGTPVAFVDF QDTPCSTGAL
301: NHLQGTVLYS SPAGEGMRIE YAKSRMGLRR KPK

Best Arabidopsis Sequence Match ( AT2G42240.1 )
(BLAST)

001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN

Arabidopsis Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.