Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G443800.1 | Wheat | nucleus | 56.62 | 39.12 |
| TraesCS7D01G432900.1 | Wheat | nucleus | 56.16 | 38.8 |
| Zm00001d014533_P001 | Maize | extracellular | 55.25 | 38.78 |
| EER88849 | Sorghum | nucleus | 54.79 | 38.71 |
| TraesCS7B01G342500.1 | Wheat | nucleus | 55.25 | 38.17 |
| GSMUA_Achr10P... | Banana | nucleus | 42.01 | 35.52 |
| HORVU7Hr1G100830.1 | Barley | plastid | 52.05 | 30.65 |
| GSMUA_Achr9P11330_001 | Banana | nucleus | 42.47 | 29.15 |
| AT2G42240.4 | Thale cress | nucleus | 39.27 | 28.48 |
| PGSC0003DMT400010226 | Potato | nucleus | 40.18 | 27.85 |
| VIT_07s0031g00180.t01 | Wine grape | nucleus, plastid | 42.01 | 27.63 |
| KRH77037 | Soybean | nucleus | 37.9 | 24.92 |
| KRH28438 | Soybean | nucleus | 38.36 | 24.85 |
| CDY22555 | Canola | nucleus | 34.7 | 22.96 |
| Os06t0151200-01 | Rice | nucleus | 26.48 | 19.33 |
| Solyc02g093120.2.1 | Tomato | nucleus | 13.24 | 15.26 |
| GSMUA_Achr10P... | Banana | nucleus | 3.65 | 6.35 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | EMBL:AK061485 | ProteinID:BAD46058.1 | ProteinID:BAF20321.1 | ProteinID:BAS99205.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os06g0687500 | EnsemblPlants:Os06t0687500-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45381 |
| UniProt:Q653F9 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000043A49F |
| SEG:seg | : | : | : | : | : |
Description
Nucleotide-binding, alpha-beta plait domain containing protein. (Os06t0687500-01)
Coordinates
chr6:+:28670224..28674822
Molecular Weight (calculated)
23923.3 Da
IEP (calculated)
9.802
GRAVY (calculated)
-0.447
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASYYNNPP PPHSSYAAPP PPPPPPPGTS LYASYRHHAY PPHPPPPPAY VGAYYDHAAE PLPPRDELRT LFIAGLPGDA KAREVYNLFR DFPGYVSSHL
101: RTSGKSSQAY AFAVFADQPS ALAAMSATNG RIFDLENNCT LHVDLAKSNS RSKRSRTDDV PSYSSEKKAR NPRGFPDSVT RTLSLLLSAR THQHLPLKTI
201: LLALHSLLLT LVQLALSKS
101: RTSGKSSQAY AFAVFADQPS ALAAMSATNG RIFDLENNCT LHVDLAKSNS RSKRSRTDDV PSYSSEKKAR NPRGFPDSVT RTLSLLLSAR THQHLPLKTI
201: LLALHSLLLT LVQLALSKS
001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQS RMGMRKKIN
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQS RMGMRKKIN
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.