Factsheet for PGSC0003DMT400010226

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093120.2.1	Tomato	nucleus	50.32	83.68
VIT_07s0031g00180.t01	Wine grape	nucleus, plastid	61.08	57.96
GSMUA_Achr10P...	Banana	nucleus	22.78	57.14
KRH28438	Soybean	nucleus	57.28	53.55
KRH77037	Soybean	nucleus	56.33	53.45
AT2G42240.4	Thale cress	nucleus	48.42	50.66
GSMUA_Achr9P11330_001	Banana	nucleus	50.32	49.84
EER88849	Sorghum	nucleus	47.47	48.39
Zm00001d014533_P001	Maize	extracellular	47.47	48.08
TraesCS7D01G432900.1	Wheat	nucleus	46.52	46.37
TraesCS7B01G342500.1	Wheat	nucleus	46.2	46.06
TraesCS7A01G443800.1	Wheat	nucleus	46.2	46.06
CDY22555	Canola	nucleus	48.1	45.92
GSMUA_Achr10P...	Banana	nucleus	34.81	42.47
Os06t0687500-01	Rice	plastid	27.85	40.18
HORVU7Hr1G100830.1	Barley	plastid	45.57	38.71
PGSC0003DMT400006410	Potato	nucleus	31.65	35.97
PGSC0003DMT400023680	Potato	plastid	26.9	25.6

Protein Annotations

EntrezGene:102581347	Gene3D:3.30.70.330	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0ZXP6	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400004004	PGSC:PGSC0003DMG400004004	EnsemblPlants:PGSC0003DMT400010226	PFscan:PS50102	PANTHER:PTHR45381	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296703A	RefSeq:XP_006339866.1	SEG:seg

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004004]

Coordinates

chr2:+:43445834..43451572

Molecular Weight (calculated)

34824.2 Da

IEP (calculated)

8.865

GRAVY (calculated)

-0.511

Length

316 amino acids

Sequence
(BLAST)

001: MDEIAQYYQY PYYQTPPPPP VPPPPPPPGT TLHALPPVVV QPLPIPQYHH PHHPSAPLLY PQDSHGDVRT LFIAGLPEDV KPREIYNLFR EFAGYESSHL
101: RSQTSSNSQP FAFAVFADQH SALMAMYELN GMVFDFEKDS KLYIELAKSN SKSKRLRPDD GRPVSEKRIK GSAAISRDSG TAGFGSIHMP GMGNSAYNTI
201: GYPPTQSQGK FDGRVGNQAA SKTAADPCPT LFIANLGQSC TEQELIQVFS RFRGFLKLKM QSTYGAPVAF VDFQDTASST EALSHLQGTI LHSSSGEGMR
301: LEYAKSRMGL RSKKSR

Best Arabidopsis Sequence Match ( AT2G42240.1 )
(BLAST)

001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN

Arabidopsis Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.